Peredibacter starrii: SOO65_20530
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Entry
SOO65_20530 CDS
T09598
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
psti
Peredibacter starrii
Brite
KEGG Orthology (KO) [BR:
psti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psti03016
]
SOO65_20530 (thpR)
Enzymes [BR:
psti01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
SOO65_20530 (thpR)
Transfer RNA biogenesis [BR:
psti03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
SOO65_20530 (thpR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
WPU65087
UniProt:
A0AAX4HPG6
LinkDB
All DBs
Position
complement(4111903..4112418)
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AA seq
171 aa
AA seq
DB search
MRLFIGLELTESIKENLAHYIAKLPQGRKGWENPHDFHLTLLFIGETSEENVISILDRMK
DVSFKPFSIQIGPIKFFNRRVMYLSILPSEELLLLQKEVEELFPEYVDPHGKSFIPHITV
KRWQRYEYDELAEGLRLHPLEPIPLDVNTISLFKSEKDQDNRKYHVIGRQI
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgagattattcataggactcgaactaaccgaatcgattaaagagaatctggcccattac
atcgccaaacttcctcaggggagaaagggctgggaaaatccacatgattttcatctcaca
cttctttttatcggtgagacctctgaagagaatgtcatttcaattcttgatcgaatgaaa
gacgtttcattcaaacctttttcaattcaaattgggcccatcaaattttttaatcgtcgt
gtaatgtatttgagtattttgccttcagaggaacttctgctgcttcaaaaagaggtggaa
gaattgtttccggaatatgttgatccacatgggaaaagtttcattcctcatataactgtg
aagcgttggcagcgttatgaatatgatgaactggcggaagggctaaggcttcatccctta
gaaccgattccactcgatgtgaataccatctcactcttcaaatcagaaaaggatcaagat
aatcggaagtatcatgtgataggccgtcagatttga
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