Peredibacter starrii: SOO65_20625
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Entry
SOO65_20625 CDS
T09598
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
psti
Peredibacter starrii
Pathway
psti03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psti00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
SOO65_20625
09124 Replication and repair
03420 Nucleotide excision repair
SOO65_20625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psti03021
]
SOO65_20625
03036 Chromosome and associated proteins [BR:
psti03036
]
SOO65_20625
03400 DNA repair and recombination proteins [BR:
psti03400
]
SOO65_20625
Enzymes [BR:
psti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
SOO65_20625
Transcription machinery [BR:
psti03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
SOO65_20625
Chromosome and associated proteins [BR:
psti03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
SOO65_20625
DNA repair and recombination proteins [BR:
psti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
SOO65_20625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
HBB
MEDS
Helicase_C
Flavi_DEAD
DUF2497
Motif
Other DBs
NCBI-ProteinID:
WPU65106
UniProt:
A0AAX4HP73
LinkDB
All DBs
Position
complement(4128014..4130410)
Genome browser
AA seq
798 aa
AA seq
DB search
MKVIKLSLQDFAMPSPLRGSIEPSSGYKTSMEKGRELHQKIQAERIAEIPDYESEVSINH
FFERDGYRFEVSGRMDGFTPGDKPHIEEIKSSFNIFDLGKTLRDKRMDHPYYLQLLTYGY
FYWVQNDVKPDLSFHLVSSRREESQDVSAYLDRYEYESWLDRRLDELVENAIKAEKRLAR
RIKLSENMPFPFPTPRQGQMELIQFIEDGMEKQKRMMIQAPTGLGKTMGVLYPSLKESLK
RGQRVIYITPKNSQQSVAEEAIEKLQVKGCNAKSLTITAKSKMCMKAEPLCNPDYCEFAK
GYYDKLATHDLRNELHKKKKLTSRVFKNMAEKYEVCPFELQIEAIEEADTVICDYNYIFG
HEGTIGRLSATGYSQEGRPNLAIDEAHNLPSRTMGQFSPVLSSYAIETMREEMKDLPKKF
ARDGEELIDLCLMTIKEASPDKVETKSLKLDIDPFLAVNEELKSFLSRYLESDVEIKARD
VVLRLVFYWSEFSDTLMTVGTTDSAFFITGQNDGKNRSIKITCCDASELIKDRYDHFQNV
VAFSATLKPFDYYAKLAGLDDEKLVLEEFMSPFKAENRKVLIIPQISTKFSVRQQNYPKI
AETIQRVAGLRSGNYLAFFPSFDFMEKTLAAFKVPAGFTVTKQNRYMKNSDVEEILEKLK
AQTHPTILFGVQGGVFSEGIDYAGDMVIGAFVIGPPLPSFDFERERMKDYYETSYQAGFD
YAYTFPAMAKAVQAAGRVIRTESDRGIIVLMDDRFLEKSYSQSLPQDWFEASPRELVSSS
ILNDVSSFWSKLEDTKVK
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtcattaagctttctcttcaggattttgccatgccttctcctttgcggggaagt
attgagccttcttctggttacaagaccagcatggaaaagggacgtgagcttcatcaaaaa
attcaggcagagagaattgctgaaattcctgattacgaatcagaagtgagtattaatcac
tttttcgagcgtgatggttaccgcttcgaagtttcggggcgtatggatggatttactccc
ggtgataaacctcacattgaagaaatcaaatcaagttttaatatttttgatctgggtaag
accttgcgggataaacgcatggatcacccttattatcttcagcttctgacctatgggtat
ttttattgggtccaaaatgatgtgaaacctgatttaagttttcatctggtttcttctcgc
agagaggaaagccaggatgtgagtgcttatcttgatcgctatgagtatgaatcgtggctt
gatcgaagattagatgagttggtggaaaacgccattaaggccgagaagcgtctagcgcga
agaattaagctttcagaaaatatgccatttccttttccaactcctcgtcaaggacaaatg
gaactcattcagttcattgaagatggaatggagaagcagaagcgcatgatgatccaggca
ccaactggtctgggtaagaccatgggtgtgttgtatccttcgcttaaagaatctttgaag
cgcgggcagcgagtgatttacatcactcctaaaaatagtcagcagtcggtggcagaagag
gcgattgaaaaacttcaggtgaaagggtgcaacgctaaatcacttaccattaccgcaaaa
agtaagatgtgcatgaaggccgagcctttatgtaatccagactactgtgagttcgccaaa
ggttattacgataaacttgcaactcatgatcttcgtaatgaactccataagaaaaagaaa
ctcacttctcgcgtgtttaaaaacatggcggagaaatatgaagtctgtccatttgagctt
cagattgaagcgattgaagaagcggacacggtcatttgtgactataactatatctttggt
catgaaggaaccatcgggcgcttgagtgcgacaggttattcgcaagagggaagacccaat
ctcgcgattgatgaggcccataacttacctagccgaacgatgggtcagttctctccggtg
ctttcaagttacgcgattgagaccatgcgggaagaaatgaaagatcttcctaagaaattt
gcccgggatggtgaagagctaattgatctttgtcttatgacgatcaaagaggcgagtcca
gacaaggtggaaaccaaatcattgaaactcgatattgatccctttcttgctgtaaatgaa
gaactaaaatcgttcctttcgagatacctggaatctgacgtcgaaattaaggcgcgcgat
gtggtcttacgtctggtgttttattggagtgaattctccgacactctcatgacggtggga
accactgattcagcgtttttcattaccggtcaaaatgatggaaagaatcgttcgattaag
attacctgttgtgatgcttcggaactgatcaaagatcgttatgatcattttcaaaatgtc
gtggccttctctgccactctcaagccatttgattactatgcgaagcttgcgggtctggat
gatgagaaactagttcttgaagaatttatgtctcctttcaaagcggagaatagaaaagtt
ctgatcattcctcagatttcaaccaagttttcagtgagacaacaaaactatcctaaaatc
gcggaaaccattcaaagagtggcgggccttagatctggaaattatctggcgttctttcca
agttttgatttcatggaaaagactctcgcggcctttaaagtaccggcgggttttactgtc
acaaagcagaaccgctatatgaaaaatagcgatgtggaagaaattctggagaagctaaaa
gcgcaaacacatcctacgattctctttggagtccagggtggagtcttctcagaaggaatc
gattatgccggagatatggtgatcggtgcttttgtgattggaccgccattaccaagcttt
gattttgaacgcgaacgcatgaaagattattatgagacctcttatcaggcgggttttgat
tatgcctataccttcccggccatggccaaagcagtacaggcagcggggagagttatcagg
actgaaagcgaccgaggcatcatcgttttgatggatgatcgatttcttgaaaaaagttat
tcgcaatctctgcctcaagactggtttgaggcatcaccaagggagcttgtatcaagttcc
attcttaatgatgtcagtagcttctggtccaagcttgaagatactaaagtaaagtag
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