Paracoccus stylophorae: JHW45_10485
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Entry
JHW45_10485 CDS
T08951
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pstl
Paracoccus stylophorae
Pathway
pstl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pstl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JHW45_10485 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pstl03400
]
JHW45_10485 (mfd)
Enzymes [BR:
pstl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JHW45_10485 (mfd)
DNA repair and recombination proteins [BR:
pstl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JHW45_10485 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
AAA_30
MFD_D3
AAA_16
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
WCR09547
LinkDB
All DBs
Position
complement(2155413..2158859)
Genome browser
AA seq
1148 aa
AA seq
DB search
MSEQLILSGAPEGYDAALIAREAERGQPVVHIARDDRRMAAMRAALDFLAPGLPVLDFPA
WDTTPYDRVSPSPDIQAARMATLAGLAQGAIRGPFVLLTTLNAVLQRVPARDLVAGASFA
ARVGDRIDDAALRDFLIRMGFVQSPTVTEPGDYAIRGGIIDIYPPGDLGPVRLDLFGDVL
DGARRFDPETQRTTEKLSRIEIAPMSEVILDEAAITRFRQNYRAEYGGGTNDPLYEGVSA
GRKMAGTEHWLPWFHDRMESLFDYLPGASVVLDDHVGQVIDARREMIREQFEARRAALAA
KGRADTVYKPVPPDQMFPTEAEWTTWLAAHRVLRLSVLARPPGPGVLDAGGRPGRNFAPE
RQAEQLNLFKALADHVKALSRDHRVILACFSDGARDRLSGLLADEGLTGIAPIADLRGLP
DTAGAVGLAVWPLDEGFVADGRALGSIAVISEQDVLGDRLIRGARKRRRAENFLQDTTSL
TQGDLVVHVEHGIGRYTGLETITAAGVPHDCVALEYAGGDRLFLPVENIELLSRYGHEEG
LLDRLGGGAWQARKARLKERIKLIADRLMRVAAERLLRPAPVLEPEEHDWQAFSARFPYS
ETDDQMAAIEDVTEDLAAGRPMDRLIVGDVGFGKTEVAMRAAFIAASQGMQVAVIAPTTL
LARQHFRTFAERFRGTAITVRPLSRFVGTKDAAKTREGLADGSVDIVVGTHAVLAKSVRF
KHLGLLVIDEEQHFGVAHKERLKQLCSDIHVLTLTATPIPRTLQLSLTGVRDLSVIGTPP
VDRLAIRTYVSEFDSVTIREALLREKYRGGQSFFVVPRLSDLPDIEHWLTENVPEISYIV
AHGQLAAGDLDTRMNGFYDGSHDVLLATTIVESGLDIPTANTMIVWRADMFGLSQLYQIR
GRVGRSKTRAYCYLTTKPRQPLTPQAMRRLKFLGSIDGLGAGFNLASQDLDLRGAGNLLG
EEQSGHIREVGFELYQQMLEETIAKLKSGEIEGTPEDEWAPQLNLGVPVTIPESFIPDLD
VRLGLYRRLAELTTKVELEGFAAELIDRFGPLPREVNTLLRVIRIKAMAKRANIARLDAG
PKGATVQFHQDKFPNPAGLVEFLTDQNGMAKVTDNRIVVRRDWATDADRIKGAFAIARDL
AAKAKAAA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaacagttgatcctttccggcgcccccgaaggctatgacgcggcgctgatcgcg
cgcgaggccgaacgcggccagccggtcgtccatatcgcccgcgacgaccggcgcatggcc
gcgatgcgcgccgcgctggactttcttgcgcccggcctgccggtgctggatttcccggcc
tgggacacgacgccctatgaccgcgtctcgccctcgcccgacatccaggcggcgcggatg
gcgacgctggccggcctggcgcagggcgcgatcagggggccgttcgtcctgctgaccacg
ctgaacgcggtgttgcagcgtgtgcccgcgcgcgatctggtggcgggggccagctttgcc
gcccgcgtgggcgaccggatcgacgatgcggcgctgcgcgatttcctgatccgcatgggg
ttcgtgcaatcgcccaccgtgaccgaaccgggcgattatgcgatccggggtggcatcatc
gacatttatccgcccggcgatctggggccggtgcggctggatctgttcggcgatgttctg
gacggcgcgcggcgcttcgatccggaaacccaacgcaccaccgaaaaactgtcccggatc
gagatcgcgcccatgtccgaggtgatcctggacgaggcggcgatcacccgctttcggcag
aattaccgcgccgagtatggcggcggcaccaacgatccgctgtatgagggcgtcagcgca
ggccgcaagatggccggcaccgaacactggctgccgtggttccacgaccgcatggaaagc
ctgttcgactatcttcccggcgcctcggtcgtgctggacgatcatgtcggacaggtgatc
gacgcccggcgcgagatgatccgcgaacagttcgaggcgcgtcgtgcggcgctggccgcc
aagggccgcgccgatacggtctacaagcccgtgccgcccgaccagatgttcccgaccgag
gccgaatggacgacatggctggccgcgcatcgggtgttgcgcctgtcggttctggcgcgg
ccgccggggccgggcgttctggacgcgggcggccggccggggcgcaatttcgcgccggaa
cggcaggccgaacagctcaacctgttcaaggccttggccgatcatgtgaaggcgctgtcg
cgcgatcaccgcgtgatcctggcctgtttttcggacggcgcgcgcgaccggctgtcgggt
ctgctggccgatgaggggctgaccggcatcgccccgatcgccgatctgcgcggcctgccc
gacacggcgggcgcggtcggactggcggtctggccgctggatgaggggttcgtggccgac
gggcgcgcgcttgggtccatcgcggtcatctcggaacaggacgttctgggcgaccggctg
atccgcggcgccaggaaacggcgccgggccgagaacttcttgcaggacacgaccagcctg
acgcaaggcgatctggtggtgcatgtcgaacacggcatcggacgctataccgggttggag
acgatcaccgccgccggggtgccgcatgattgcgtggcgctggaatatgcgggcggcgac
cggctgttcctgccggtcgagaatatcgaattgctgtcgcgctatggccatgaagagggt
ctgctggaccgtctgggcggcggcgcgtggcaggcccgcaaggcgcggctgaaggaacgc
atcaagctgatcgccgaccggctgatgcgcgtggccgcggaacgcctgctgcggcccgcc
ccggtgctggagcccgaggaacatgactggcaggcattctcggcccgctttccctacagc
gagaccgacgaccagatggccgccatcgaggacgtgaccgaggatctggcggcgggccgg
ccgatggaccggctgatcgtgggcgacgtcggtttcggcaagaccgaggtggcgatgcgc
gcggccttcatcgccgcctcgcaggggatgcaggtggcggtcatcgcgccgaccacgctg
ctggcgcgccagcatttccgcaccttcgccgaacggttccgcggcaccgcgatcaccgtg
cgcccgctgtcgcgctttgtcggcacgaaggacgcggcgaagacccgcgaagggctggcc
gatggcagcgtcgatatcgtcgtcggcacccatgcggtgctggccaaaagcgtgcggttc
aagcatctgggcctgctggtcatcgacgaggaacagcatttcggcgtcgcccacaaggaa
cggctgaaacagttgtgcagcgatatccacgtgctcaccctgaccgccacgccgatcccg
cgcacgctgcaactgtcgctgacgggcgtgcgcgacctgtcggtgatcggcacgccgccg
gtggaccggctggcgatccgcacctatgtcagcgaattcgacagcgtgaccatccgcgag
gcgctgctgcgcgagaaatatcgcggcggacaaagcttcttcgtggtgccgcgcctgtcg
gacctgcccgacatcgaacactggctgaccgaaaacgtgcccgagatcagctatatcgtc
gcccacggccagcttgccgccggcgatctggacacgcgcatgaacgggttctacgacggc
agccacgacgttctgctggccacgaccatcgtggaatcggggctggatattccgaccgcg
aacaccatgatcgtctggcgcgccgacatgttcggcctgtcgcagctgtatcagatccgc
ggccgggtggggcggtccaagacccgcgcctattgctatctgaccacgaaaccgcgtcag
ccgctgaccccgcaggcgatgcggcggctgaaattcctgggctcgatcgacgggctgggc
gcgggcttcaacctggcctcgcaggatctggatctgcgcggcgcgggcaatcttctgggc
gaggaacaatccggccatatccgcgaagtcggcttcgagttgtatcagcagatgctggag
gaaaccatcgccaagctgaaatcgggcgagatcgagggcacccccgaggatgaatgggcg
ccgcagctgaatctgggcgtgccggtcacgatccccgaaagcttcatccccgatctggac
gtgcggcttgggctttaccggcggctggccgagctgaccaccaaggtcgagctggagggt
ttcgccgccgagctgatcgaccggttcgggccgctgccgcgcgaggtgaacacgctgctg
cgcgtgatccgcatcaaggcgatggccaagcgcgccaacatcgcccggcttgatgccgga
cccaagggcgcgacggtccagttccatcaggacaaattccccaacccggccgggctggtc
gaattcctgaccgatcagaacggcatggccaaggtcaccgacaacaggatcgtggtgcgc
cgcgactgggccaccgatgccgaccgtatcaagggcgcattcgccatcgcgcgcgatctg
gcggcaaaggcgaaggccgcggcgtga
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integrated database retrieval system
