Pseudomonas stagnisoli: ACOAPY_03360
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Entry
ACOAPY_03360 CDS
T11799
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pstp Pseudomonas stagnisoli
Pathway
pstp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pstp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACOAPY_03360 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pstp03021
]
ACOAPY_03360 (rpoB)
03400 DNA repair and recombination proteins [BR:
pstp03400
]
ACOAPY_03360 (rpoB)
Enzymes [BR:
pstp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACOAPY_03360 (rpoB)
Transcription machinery [BR:
pstp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACOAPY_03360 (rpoB)
DNA repair and recombination proteins [BR:
pstp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACOAPY_03360 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
IniB
RickCE_cat
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
XQE67635
LinkDB
All DBs
Position
703982..708055
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQQGVSKEQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLDAFYDTNVFHVKGET
LSLELVPSRLRGEIAAFDIKDEKGKVIVEQGRRITARHINQIDKAGIKELEVPLDYVLGR
TTAKVIVHPATGEIVAECNTELTTDVLAKIVKAQVVRIETLYTNDIDCGPFISDTLKIDS
TGNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GSGVLSKEDIVDVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGKVTDEIVFLSAIEEADHVIAQASATLNAKGELIDELVNVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
KVSRGDIMADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVLAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKQQLDE
IRKDLNEEFRIVEGATFERLRSALVGAKAEGGAGLKKGTVIDDAYLDGLERGQWFKLRMA
DDALNEQLEKAQAYISDRRQMLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKIAELRKFLNEIYNEIGGRQESLDTFSDAEILDLAKNLKGGVPMATA
VFDGAKESEIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggat
gtgatggatgtgccgtatctcctggccatccagctggattcgtatcgcgaattcctgcag
caaggagtgagcaaggagcagttccgcgacgttggcctgcatgcggccttcaagtccgta
ttcccgatcatcagctactctggcaatgccgctctggagtacgtcggctatcgcctgggc
gagcccgcgttcgacgtcaaagagtgcgtgctgcgtggcgtgaccttcgccgtgccgctg
cgcgttaaagtccgtctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtgtacatgggcgaaattccgctcatgaccgagaacggtaccttc
atcatcaacggtaccgagcgtgtgatcgtttcccagctgcaccgctccccgggtgtgttc
ttcgaccacgaccgtggcaagacccacagctccggcaagctgctgtactccgcgcgcatc
attccctaccgcggttcctggctggacttcgagttcgacccgaaggactgcgtgttcgtc
cgtatcgaccgtcgccgtaagctgccggcctccgtcctgctgcgcgccctgggctacagc
accgaggaggttctggacgccttctacgacaccaacgtattccatgtgaagggcgagacc
ctcagtctggaactggttccgtcgcgcctgcgtggcgagatcgccgcgttcgacatcaag
gacgagaagggcaaggtcatcgttgagcagggccgccgtatcaccgcgcgccacatcaac
cagatcgacaaggccggcatcaaggagctggaagttccgctcgactacgtgctcggtcgc
accaccgccaaggtcatcgtgcatccggccaccggcgagatcgttgctgagtgcaacacc
gagctgaccaccgacgtgctggccaagatcgtcaaggcccaggtcgttcgcatcgagacc
ctgtacaccaacgacatcgattgcggtccgttcatctccgacacgctgaagatcgactcc
accggcaaccagctggaagccctggtcgagatctaccgcatgatgcgtcctggcgagccg
ccaaccaaggatgccgccgagactctgttcaacaacctgttcttcagcgccgagcgttac
gacctgtccgccgtcggccgcatgaagttcaaccgtcgtatcggtcgcaccgagatcgaa
ggctccggcgttctgtccaaggaagacatcgtcgacgtgctgaagaccctggtcgacatc
cgtaacggcaagggcatcgtcgacgacatcgaccacctgggtaaccgtcgtgtgcgttgc
gtcggcgagatggccgagaaccagttccgcgtcggcctggtgcgcgtcgagcgcgcggtc
aaagagcgtctgtcgatggccgaaagcgaaggcctcatgccgcaggacctgatcaacgcc
aagccggttgcggcggcggtcaaggagttcttcggttccagccagctctcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgccgtgtctccgcactcggcccg
ggcggtctgacccgtgagcgcgccggcttcgaagttcgcgacgtacacccgacccactac
ggccgtgtatgcccgatcgaaacccctgaaggtccgaacatcggtctgatcaactccctg
gccgcctatgcccgcaccaaccagtacggcttcctggaaagcccgtaccgcgtggtcaag
gaaggcaaggtcaccgacgaaatcgtgttcctctccgccatcgaagaggccgaccacgtc
atcgcccaggcatccgccaccctgaacgccaagggcgagctgatcgacgaactggtgaac
gtgcgtcacctcaacgagttcaccgtcaaggcaccggaagacgtgaccctgatggacgtg
tcgccgaagcaggtggtttccgtcgctgcgtcgctgattccgttcctcgagcacgacgac
gccaaccgtgcactcatgggctcgaacatgcagcgtcaggccgtgccgaccctgcgtgcc
gacaagccgctggtgggtaccggcatggagcgcaacgtcgcccgtgactccggtgtctgc
gtcgtggcccgtcgtgggggcgtgatcgactccgtcgacgccagccgtatcgttgtgcgc
gtagccgacgacgaagtcgaaaccggtgaagccggtgtcgacatctacaacctgaccaag
tacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggtgac
aaggtttcgcgcggcgacatcatggccgacggtccgtccaccgacatgggtgaactggct
ctgggtcagaacatgcgcgtggctttcatgccgtggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgcgtggtccaggaagaccgcttcaccacgatccacatccaggaa
ctgacctgtgtggcccgtgacaccaagcttggcccagaggaaatcaccgcggacatcccg
aacgtgggtgaggctgcgctgaacaagctggacgaagccggtatcgtctacgtcggtgcc
gaagtgctggccggcgacattctggtcggcaaggtcactccgaaaggcgagacccagctg
actccggaagagaagctgctgcgtgcgatcttcggtgagaaggcgtccgacgttaaagac
acctccctgcgcgtgccgaccggtaccaagggtaccgtcatcgacgtgcaggtcttcacc
cgcgacggcgttgagcgcgacagccgcgccctggccatcgagaagcaacagctcgacgag
atccgcaaggacctgaacgaagagttccgcatcgtcgaaggtgcgaccttcgagcgtctg
cgttccgctctggtcggcgccaaagccgaaggcggtgccggcctgaagaaaggcaccgtg
atcgacgatgcctacctcgacggtctggagcgtggtcagtggttcaagctgcgcatggct
gacgatgctctgaacgagcagctggagaaggcccaggcctacatcagcgatcgtcgccag
atgctggacgacaagttcgaagacaagaagcgcaagctgcagcagggcgatgacctggcg
ccgggcgtgctgaagatcgtcaaggtctacctggccatcaagcgccgcatccagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtggtctcggtgatcatgccggtcgaa
gacatgccgcacgatgccaatggcaccccggtcgacatcgtcctcaacccgctgggcgta
ccgtcgcgtatgaacgtcggtcagattctcgaaacccacctgggcctggcggccaagggc
ctgggcgagaagatcaaccgcatgctcgaagagcagcgcaagatcgccgaactgcgcaag
ttcctcaacgagatctacaacgagatcggtggtcgtcaggaaagcctggataccttctcc
gatgccgagattctggatctggcgaagaacctgaagggcggcgtgccgatggctactgcc
gtattcgacggcgccaaggaaagcgagatcaaggccatgctgaagctggccgatctgccg
gaaagcggccagatgcgcctgttcgacggccgtaccggtaaccagttcgagcgtccgacc
accgtcggctacatgtacatgctcaagctgaaccacctggtcgacgacaagatgcacgct
cgttccaccggttcctacagcctggttacccagcaaccgctgggtggtaaggcgcagttc
ggtggtcagcgcttcggtgagatggaggtctgggcgctggaagcctacggcgccgcctac
accctgcaggaaatgctgaccgtgaagtcggacgacgtgaacggccggaccaagatgtac
aagaacatcgtggacggcgatcaccgcatggaggccggcatgcccgagtcctttaacgtg
ttgatcaaagagatccgctcgctcggtatcgacatcgaactggaaaccgaataa
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integrated database retrieval system
