Puccinia striiformis f. sp. tritici (wheat yellow rust fungus): Pst134EA_006745
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Entry
Pst134EA_006745 CDS
T09520
Name
(RefSeq) hypothetical protein
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
pstr
Puccinia striiformis f. sp. tritici (wheat yellow rust fungus)
Pathway
pstr03018
RNA degradation
pstr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pstr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Pst134EA_006745
09123 Folding, sorting and degradation
03018 RNA degradation
Pst134EA_006745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pstr03019
]
Pst134EA_006745
03041 Spliceosome [BR:
pstr03041
]
Pst134EA_006745
Messenger RNA biogenesis [BR:
pstr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Pst134EA_006745
mRNA degradation factors
5'-3' decay
Lsm complex
Pst134EA_006745
Spliceosome [BR:
pstr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
Pst134EA_006745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
LSM12_LSM
LSM14
KOW7_SPT5
SM-ATX
Motif
Other DBs
NCBI-GeneID:
72024085
NCBI-ProteinID:
XP_047808910
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All DBs
Position
4:207442..208790
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AA seq
84 aa
AA seq
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MSSTILPLELIDRCIGSRIWVIMKTGREFTGKLLGFDDYVNMVLEDVTEFETTAEGQKKT
NLQQTLLNGNQICMLVPGGNGPEN
NT seq
255 nt
NT seq
+upstream
nt +downstream
nt
atgagctcaaccatcttacctcttgaattgattgatcgatgtatcggatcacgtatctgg
gtgatcatgaaaactggacgtgaatttacgggtaaactgctgggatttgatgattacgtt
aatatggtacttgaagatgtaactgaattcgaaacaacagctgaaggacaaaaaaagact
aacctacaacaaacacttttaaatgggaatcaaatctgtatgcttgtaccaggtggcaat
ggacctgaaaactaa
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