Puccinia striiformis f. sp. tritici (wheat yellow rust fungus): Pst134EA_006780
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Entry
Pst134EA_006780 CDS
T09520
Name
(RefSeq) hypothetical protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pstr
Puccinia striiformis f. sp. tritici (wheat yellow rust fungus)
Pathway
pstr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pstr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pst134EA_006780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pstr03019
]
Pst134EA_006780
Enzymes [BR:
pstr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Pst134EA_006780
Messenger RNA biogenesis [BR:
pstr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
Pst134EA_006780
mRNA degradation factors
3'-5' decay
Ski complex
Pst134EA_006780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
AAA_22
Motif
Other DBs
NCBI-GeneID:
72024120
NCBI-ProteinID:
XP_047808943
LinkDB
All DBs
Position
4:complement(397545..403026)
Genome browser
AA seq
1240 aa
AA seq
DB search
MAESSEPVEKTDHSKEAANEERLSPAELKAFLSERYLTPYHQLPPPWLSTQITHWDENPL
LDLARQESINEFLHTQPSPMTTHLEFVFAGLEGDVVDCVVSERPPGSCLTSKTSSSVIRQ
PANYTSDFIRGRSGNLPFQPGGLVSSGLAEPVSDPTVNATDELEKDLESTRGGIRTIPPG
FTRGLDFGAQDGNEAAEDGLQSTFPAANLTPVQLDPVYVSSSNNDWRRKNKGGNTNASQG
DTARIDTEVDVLLADTQYALTSAMPVIKPRRQPVVSKRDWAHVVDVNQELANFRELVPNL
AREYPFELDTFQKEAIYHLEMGDSVFVAAHTSAGKTVVAEYAVALARRHMTRCIYTSPIK
ALSNQKFRDFRQTFDAETVGILTGDVQVNPEASCLILTTEILRSMLYKGADLIRDVEFVV
FDEVHYINDSERGVVWEEVIIMLPAHVTIILLSATVPNTKEFADWVGRTKQKDIYVISTP
KRPVPLEHFLYANKEIHKIVDAKGEFLSQGWKDAIESMKRSQVKEREASGQAPLTSGRGH
QEDQNRWVHLVGMLKKKELLPVVAFTFSKKRCEENATSMPNTDLCSAREKSEIHVVIERS
LTRLNGTDKILPQIIRMRDLLARGIGVHHGGLLPIVKEVVEILFSRGLVKILFATETFAM
GVNMPARCVVFSGIQKHDGRSYRELLSGEYTQMSGRAGRRGLDSTGVVIIICGNEVPDTV
GLHKMILGPATKLQSQFRLTYNMVLNLLRVEALRVEEMIKSSFSENAQQRLLPEQQKKIL
EVERELQALPIQDDTDIIQDTRRYHEVSTRLVELNSQLVKFVVKHPSGSRALCSGRLVIL
NDNHFRHSLAAILKPAQSLRANPGGRLDHTPSYFVLAFVPPDIRAGTNDIAADEVPPAWP
PLIQPTTSDLTYELAVVPITSISMLTKHTLSLNVNEIADQHRKSHMVEALNQLVSSGILD
ELARTPRNQLLSQFEVEHPKLRSLEFRDLLSRRTQDYALWEALSYVEKDEQFEKLYAAIH
RERIITNRLALLQASLSEQNLELLPDYENRLEVLKELKFIDDRATVLLKGRVACEINSSH
ELILTEVILDNIMADFDPAETVALLSSFVFQGKTESEPLLTPNLQQGCDRLAKIADRIEA
VSLRNKVAEHDQASSGKGRPNFGMVELVWQWAQGMPFSELMEMSEIQEGVIVRTMTRLDE
SCREVRDAARIIGDISLGKKMEACQALIRRDVVFVSSLYI
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atggccgagtccagcgaaccggtagagaagacagaccattccaaggaggcagcgaacgag
gaacggctgagcccagcagagttgaaggcattcctgagcgaaagatatcttaccccttat
catcagctccctccaccttggttatccactcaaatcacacactgggatgagaaccctttg
ctggacttggctcggcaggagtcgattaatgagttcttacacacccaaccgagtccgatg
actacccacttggaattcgtcttcgccggattagagggggacgtggtcgattgtgtggtg
tctgaacgaccacccggctcatgccttacctccaagacatcgtcctccgtaatcagacaa
ccagccaactacacatcggactttatacgtggtcgttctgggaatctccctttccagcca
ggcgggctagtgtcatcaggcttggctgaacccgtttctgatccaactgttaacgccact
gatgagctcgaaaaggacctcgagtcgacgcgtggtggtattcgtactattccccctggg
ttcacgcgagggctagacttcggagctcaggatggtaacgaagcagctgaggacggattg
cagtcaacctttccagccgccaatctcaccccggttcagttagacccagtttacgtctct
tcatctaataacgattggcgacgaaagaacaagggcgggaataccaacgcttcgcaagga
gacacggctcgaatagataccgaagtcgatgtacttcttgcggacacacaatacgcgttg
accagtgccatgccagtaatcaaacctcgccgccaacccgtcgtatcgaagcgggattgg
gctcatgtagtggatgtcaaccaagaactagccaacttccgtgaattggtacccaacttg
gcccgagagtatcctttcgagttagataccttccagaaagaagcaatctatcatcttgag
atgggagattcagtcttcgttgctgctcatacatctgccggaaaaacggttgtagcagaa
tatgctgttgctcttgcacgtcggcacatgaccagatgtatatacacttccccgatcaag
gctctctcgaatcaaaagttccgtgattttagacagacgtttgatgccgaaaccgtcgga
atcttgaccggcgatgttcaagttaacccagaagccagctgcttgattttgacgactgag
atcttgagaagcatgttgtacaaaggggctgatctgattcgtgatgtagaatttgtggtc
tttgatgaagttcactatatcaacgattctgagcgaggggttgtctgggaagaagtcatt
atcatgttgccagcccatgttaccatcattctcttgtcagcaacggtcccgaacaccaag
gaatttgcagattgggttggacgtacgaaacagaaagatatctatgtcattagtacgcca
aagcgaccggttccactcgaacatttcctgtacgccaacaaagaaatacataaaatcgtt
gatgccaagggcgaatttctgagccaaggatggaaagatgcgatcgaaagtatgaagcgc
tcacaagtgaaagagcgggaagcttcaggacaggccccattgacgagcgggcgaggtcat
caagaagaccagaatcgatgggtacatctggttggaatgttgaagaaaaaggaattactg
ccggtcgtggctttcactttctcaaagaaacgttgcgaagagaacgcaactagtatgcca
aatactgatctttgttcggcgagagaaaagagtgaaattcatgtcgtcattgaacggagc
ttgaccagactaaatggcactgataagatactgccacaaattatccgaatgcgggacttg
cttgctcgtggaatcggagttcatcatggtggattacttcctattgtcaaggaggtggtt
gaaatcttattttctcgaggattagtcaaaattttatttgctacggagacgtttgccatg
ggtgtcaatatgcctgctcggtgtgtggtattctctggcattcaaaaacacgatggtcga
tcgtaccgggagcttttatctggtgaatatacccaaatgtcagggagagctggtcgacgt
ggtttagatagtaccggtgttgtaatcattatttgtgggaatgaagtacctgatacggtt
ggcttgcacaaaatgattttgggtccagcaactaaactacagtctcagttccggttgaca
tacaatatggttttaaacttgttgagagtggaagccttgcgagttgaagaaatgatcaaa
agtagcttttctgagaacgctcaacagaggttacttccagaacaacagaagaagattctc
gaagttgaaagggaattacaggctctaccaattcaggacgatacggatattattcaagat
accaggagatatcatgaagtctccactcgtctagtcgaactgaattcacaacttgtcaaa
ttcgtggttaagcatccaagcggttcccgggccctttgctcgggacggttggtcatattg
aacgataatcattttcgccacagccttgctgcgatcctgaagccggctcagtctttacgt
gctaaccccggtggccgcttggaccatactccaagctattttgttctggcttttgttccg
cctgatatacgcgcaggaacaaatgatattgcagctgatgaggttcctcctgcatggcca
ccgctcattcaacctaccacttccgatctgacatatgaactggcggtggttccaatcact
tcaataagcatgttaacgaaacatacactaagtttgaatgtgaacgagattgcggatcaa
catcgcaaatctcatatggtagaggccttaaaccaattggtatcttcaggaatactcgat
gaactcgcaaggacaccccgaaaccagctcttatctcagttcgaagtagagcaccccaaa
ttacggagcttggagttccgggatttactctctcgtagaacgcaggactatgccctttgg
gaagctctgtcgtacgttgagaaagatgagcaatttgagaagctttacgccgcaattcac
cgagagaggataatcactaaccgcctagccctcttacaggccagcttgagcgaacaaaac
ttggagcttttaccggactatgaaaaccggttggaagtcctgaaggagctcaaattcatc
gatgaccgtgccacggtattgctcaagggtcgtgtagcttgtgagatcaactcatcacat
gagctcatcctaacagaggtgatattggacaacatcatggccgactttgatccagcagaa
acagtagcgcttctcagttcgtttgtcttccagggaaagactgagagcgagccgcttttg
acgccgaacctgcaacaaggatgtgatcggctggccaagatcgcagaccggattgaggcc
gttagtctcagaaataaagtggctgaacatgatcaggctagttctggaaaaggtagacct
aactttgggatggttgaattggtctggcaatgggctcagggcatgccgttttctgagttg
atggaaatgagcgaaatccaagagggtgtgattgtccgaacaatgactcgattagatgaa
tcatgccgtgaggttcgggatgcggctaggatcatcggggatatctcgctgggcaagaag
atggaggcttgccaggctttgattcgtagagatgtagtcttcgtcagcagtttgtatatc
taa
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