KEGG   Puccinia striiformis f. sp. tritici (wheat yellow rust fungus): Pst134EA_009864
Entry
Pst134EA_009864   CDS       T09520                                 
Name
(RefSeq) hypothetical protein
  KO
K14400  pre-mRNA cleavage complex 2 protein Pcf11
Organism
pstr  Puccinia striiformis f. sp. tritici (wheat yellow rust fungus)
Pathway
pstr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pstr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    Pst134EA_009864
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pstr03021]
    Pst134EA_009864
   03019 Messenger RNA biogenesis [BR:pstr03019]
    Pst134EA_009864
Transcription machinery [BR:pstr03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     Pst134EA_009864
Messenger RNA biogenesis [BR:pstr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     Pst134EA_009864
SSDB
Motif
Pfam: CID Pcf11_C zf_PCFS4 UBA_6
Other DBs
NCBI-GeneID: 72026146
NCBI-ProteinID: XP_047808797
LinkDB
Position
5:4442857..4446447
AA seq 791 aa
MQGLPAPPPSIGYDVNEFRRFFKFGLDQLQYNNKYIINDLTTLASVHHHRMSTYIVKDIE
QHIRNSHPTHRLIGFYVLDSICKNLGHPFPQLFKPFIERLFLIAYRDIEDVDPLTKVKFE
ELLGTWRTGSANQTELFDPDIQRRIEESVFGNWRRDDSIASQAFLSGIKQQPAVATPAEK
ASILYDVRRILSEREQVAATYPGDQTNLAQMTTLQQLEQLIASQQLTINQVDDIRRQLQP
LKASILPPAPVEYGIPPSHLPAVVHQMDPLPTPHNPIEPFGDSDSLASLTRLLETNPNIL
LQAVNQSMAFPAHQEHSIQQHQTPLNFDDPNVQLAINHMAQLSQPPVAPSVPQLTQELAN
TNMFDSEQLAAALAYLNPTSQINSLLPELGSQELPIELIHQPSPAPSTLSTSESITTSQI
DPTILEYENMIAGLPIELQNSSINRVKPAEIADVLYSHIPQFCRQDGSRFLYGKVGSQRA
SEQLDRHFRLQRRVRESGQRAQQRMWSQLHSEWLDSHDFGSTGSGENSQVEANQRKKRKS
IEEDKSVNELSKKSIIRPSSPGLASQPCPICQEPFETRLDEDEDEFYWTNAIELTKEAGK
RVVYHATCHYETIRNKARMKIKFELEENRLKQKIQTEADLKTHGENGKVEQANGSGYPFT
HEVIEVGEASSRSSSNNDNQPVDSTSGGDDDDKCLLQVDESFFGETETVANDIKLESSDL
IPLVSSEPRLSNDPQVKSEPETIVLPPHRASSPLLGKRKPSPIVNLDPSSDLNDPLVVPH
SEVSSKKSKLS
NT seq 2376 nt   +upstreamnt  +downstreamnt
atgcaaggtctgcctgctccaccaccctcgattggctacgatgtcaacgagtttcgaagg
ttcttcaaattcggtctcgaccaactccagtataacaataaatacatcatcaacgatctc
acaacccttgctagtgtccaccaccatcgcatgtcaacctacatagtaaaggatatcgaa
cagcacatccgaaacagccatcctactcacaggctaataggattttacgtcctggattca
atctgcaaaaatttgggccatccctttccacaattattcaagcccttcatcgaacgactg
tttttaattgcttatcgagatattgaggacgttgatccactcaccaaggtcaaattcgaa
gagctgctaggaacgtggagaactggatccgcaaaccaaaccgaactctttgatccggat
attcagaggcgaatagaagaaagcgtttttggtaactggcgacgtgatgattcaattgct
agtcaggcatttctcagtgggattaagcagcagccagcagttgcaacgccggcagaaaaa
gcaagcatattatacgatgtacgtaggattctatcggaacgcgaacaggtcgccgcaact
tacccaggcgaccaaaccaacctggctcaaatgaccactctccaacaactcgaacaatta
atcgctagtcaacaactgacaatcaatcaagtggacgacattcgcagacagctccagcct
ctcaaagcctctattctaccgcctgccccagttgagtatggtattccaccatcacacctg
ccggcagttgtacatcaaatggatcctttacctacccctcataatcctattgaacccttt
ggagactctgattcacttgctagtctaaccagacttctagaaaccaatcccaacatttta
ctacaggcggtcaatcagtcaatggcttttcctgctcatcaagagcactcaattcaacag
catcaaacacctctcaactttgatgatccaaacgttcagctggctatcaatcacatggcc
cagctttcacagccccctgttgccccttcagtccctcagcttacacaagaacttgcaaat
acaaacatgtttgacagtgaacaacttgctgccgcgcttgcctatctcaatccgacaagt
cagattaacagtttactacctgaactcggtagtcaagagctacctatcgagctcattcat
caacctagccccgccccctctacactcagtaccagcgagagtatcacaacttcacaaata
gatccaacaatacttgaatacgaaaatatgatcgccggattaccaatagaacttcaaaat
tcatccatcaatcgtgtcaaaccggcagagattgccgatgttctttactcacatattcct
cagttctgtcgacaagatggtagtcgatttttgtatggaaaagttggaagtcaacgagca
tcagaacaacttgaccgacactttcgattacaaagacgggtacgagagtctggacaacgc
gcacaacaacgaatgtggtcacaactacactcagaatggctagactctcacgattttgga
tcgactggaagtggggagaactctcaggtggaggcaaatcagaggaaaaagaggaaatcg
atagaagaagacaaatcggtaaacgaactttccaagaaatctatcattcgacccagttca
cctggtctagctagtcaaccatgtccgatctgtcaagagccattcgagactagactcgat
gaagatgaggatgaattttactggaccaacgcgatcgaactcaccaaagaggcaggcaag
cgggtagtgtatcatgcgacctgtcattacgagacgattcggaataaggcccgaatgaag
attaaatttgaactggaagagaaccgtctgaagcagaagattcaaacggaagccgatctc
aagactcacggtgagaatggaaaggtagagcaagctaatggatcaggatatccattcact
catgaagtcatagaggtgggtgaggctagtagtagaagtagtagtaataatgataatcaa
ccagtcgactccactagtggtggtgatgatgatgataaatgtttacttcaagttgatgaa
agcttttttggagaaactgagactgtagcaaatgatatcaaacttgagtcttctgacctg
attccccttgtctcctccgaaccccgactatctaatgatccacaagtaaaatcagaacct
gaaacaatcgtgctccctcctcatagggcttcttctcccttgcttggtaaacgaaaacct
tccccaatcgtcaatcttgatccttcatctgatcttaacgatcctcttgtcgttccacac
tctgaggtctcgagtaagaagtccaaactgagttga

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