Puccinia striiformis f. sp. tritici (wheat yellow rust fungus): Pst134EA_011703
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Entry
Pst134EA_011703 CDS
T09520
Name
(RefSeq) hypothetical protein
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
pstr
Puccinia striiformis f. sp. tritici (wheat yellow rust fungus)
Pathway
pstr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pstr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Pst134EA_011703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pstr03021
]
Pst134EA_011703
03019 Messenger RNA biogenesis [BR:
pstr03019
]
Pst134EA_011703
Transcription machinery [BR:
pstr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
Pst134EA_011703
Messenger RNA biogenesis [BR:
pstr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
Pst134EA_011703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
72026870
NCBI-ProteinID:
XP_047807536
LinkDB
All DBs
Position
6:3251421..3257957
Genome browser
AA seq
1495 aa
AA seq
DB search
MNVIHRQHLPPSGVEFSCQASLTPSTLSRYSDVILSSRSRPKPITNLIIARSTLLQVFEL
CLTDDDDFENNHLRNHEENKNKKKKYKLFHVCEHRLHGRVTGIQRLTTLDTQEDGLDRLL
VSFQDAKMTLLEWSNPAADLVPISLHTFEKLPQITQGDLPRDFQAQLEVDPLSRCAVLLL
PQATLAVLPFFQDQLDLDGLGLSGGLNSALGPEQQRFQSLPYASSFILDFNQQLLNHLPP
VLENQQRPIKSVIALKFLPGFSEPTLAVLYQTQYTWSARLENDTNSTALIVLTLDLGSNH
FPIISHTKNLPYDAHGLVACPKELAGVLVLCADMILHVDQSSKIIGVATNGWIKHTSELQ
IPRQETVQLITPATNVAHLLSNNLERGEDLEDGEEQDDKPMPDGHEELLIRLDNSKIVFS
KPDLAFVFLRSGQVFSLQFQRDGRTLTKLIFEKFDVRSIIPSTVTKLSDECLFVGSMLGD
SALYAIDELYIQTSNDRPTNAQIQTSKVVKTQTNIDIDEDIYGERVEANHAQANDPSRLY
DPHKSNQAEDGRTGGLQSPKPFLRLCDVIKAHGPIRDFTMASTGVGNMPLELLACTGAGD
LGGLTVFHREIPLRKRRKLSLDQSASKIRALFVTPLLDDGMSADERKLIWMVRSGPRTEI
ATYGDSDEISIINTFPEKTLAVSSFFGKRFVVQVTNTVIKLLSSSLEEVQVIQPEPAVRI
KRASITEDYVMLETYCGLKLIYQGNHESKTLSKLPFPPESDEVQTASILKVALPVYSKYA
SKSRSDATEIKTVNEEEDLYNNVQQDSNGDVEMQPKEDSTEEIKSQTTEDCTEACWLFTT
TRNGSFQIRDLPTLALVYTAARIDTLPETISDEEKFDGDTQPVELFGAVDEAAPPEQIAH
IFGFLTGAIASRPHLAVMLKNGAFAVYEILTNFTIPIRLPEKEGHPAVFLKKVIARQLES
IQDHDEIPAEPEDHDMEQSSPNDEETPSRSFTSIKMDGKFKGIYLAGQPPVWLLSTDHGP
CRIYDSPEGKTIQSITQLSDGFLMSLTESSFENEDQTPESESSLWETFISEYVCFDRDIS
STLVKTGRPFNKVFYDSSSETVVGASYLETAFANFDEEGNLMWQPDDDSLIRATTFRSSL
ELILPGKWVTIDGYEFQQNEWVTSMANVELDTRSTVSGRRQFVGVGTTCNRAEDLAARGG
IYVFEIIQVNRAERHHEYNRALRLRYYEETKACVTAVDAINGYFLHSMGQKLYAKCFEQD
ERLLAVGFLDIKPYATCLRIFKNFILLGDAVKGITLVAFQEEPYKLIELGHTYVDLKCST
VNFLVIDAKLAIVATDLNGIIRIFEYNPTNIESQGGQKLLCRTEFNTSSEMSCSMQFGKR
LSPKDEAKVMGTFFASLDGSISSLVPAKDAVYKRLQLVQTRLTRHIQHFAGLNPKGHRTV
RNDMVSRAINRGILDGELLMKFDLLSISQQREIASLAGSDRETVLVNLQNLKGLW
NT seq
4488 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtcatccatcgccagcatcttccgccatcaggggtagaattctcgtgtcaagct
tccctgactccatccaccttatcacgctattcggacgtaatcttatcatctaggagccgg
cccaagccaataactaatctgattattgcccgatcgactctactccaagtctttgagctt
tgtctaacagatgatgatgactttgaaaacaatcatctaagaaatcatgaggagaacaag
aacaaaaagaagaagtataaactcttccatgtctgtgagcacaggttgcatggtagagtg
actgggatacaacggctcaccacactcgatacccaggaggatggcttggatcgcttgctg
gtgagcttccaagatgccaagatgacgttactggagtggtcgaatccagctgccgatttg
gtgccaatctcgctgcatacgtttgaaaagcttccacaaatcactcaaggagacttaccc
agggacttccaagcgcaactagaggtcgacccactctcacgatgtgccgtactgctcctg
cctcaggctaccctagccgtcttgcccttctttcaagatcaactggatctcgacggtctt
ggtctcagtggcggtcttaatagcgcgttgggaccagagcagcaacgattccaaagcctc
ccttatgctagctcgtttattctcgacttcaaccaacaacttctcaatcatctcccacct
gttctcgaaaatcaacaacgacctatcaaatcagtgatcgcgttgaaattccttcccgga
ttcagtgaacctacattagctgtattatatcaaactcagtacacctggtctgctagactc
gaaaatgatacaaatagcacagctctgatcgtccttacccttgatttgggctcaaaccat
ttcccgatcatctcacataccaagaacctgccatacgatgcacacggattggtagcttgt
cccaaggaactggctggagtactcgtactttgtgccgatatgatattacacgtcgaccaa
agcagcaaaattatcggtgtggccacgaatggctggatcaaacatacttctgagctccaa
atcccgcgtcaagagacggtccaactcatcacgccagccaccaacgtggcgcatctctta
tcaaacaacctcgaacgtggtgaagatctcgaggacggagaagagcaagacgataaaccc
atgcccgacggacatgaggagcttttgattagactagataactcaaagatagtatttagc
aaacctgacctagccttcgtattcctaaggagtggacaagtattcagcctccaatttcag
agggacgggcggactttgactaaactgattttcgaaaaattcgacgtccgatcaatcatc
ccatcaactgtaaccaagttgagcgatgaatgcctcttcgtaggatccatgttgggcgac
tctgctctttatgcaattgacgaactatatatccaaacatcaaacgatcgccccaccaat
gctcaaattcagacctccaaggttgtcaagacacagacgaacatcgatatagatgaggat
atctacggcgaacgtgtggaggcgaaccatgcacaggcgaacgacccttcccgactttat
gatccacacaaatcgaatcaagctgaggatggaaggaccggaggacttcagtcaccaaaa
cctttcctgcggctttgtgacgtcattaaggcccatggaccaattcgcgacttcacaatg
gcctcaaccggtgttggaaacatgccgttggaacttcttgcgtgcacgggtgctggtgat
ttaggaggattgactgtcttccatagagagatacccttgaggaaaaggcggaaattaagc
ttggatcaatcggcttccaaaatcagagcgctctttgtcaccccacttcttgatgatggg
atgtcggcagatgaaagaaaattgatttggatggtgcgatcgggtccccgcactgagata
gccacatatggagattcagacgagatttccatcatcaacacgttccccgaaaaaacgttg
gccgtctcatcatttttcggaaaaagatttgtcgttcaggtaacgaataccgtcatcaag
ctgttgtcatccagtctggaggaagttcaagtcattcaacctgaaccagccgtcagaatc
aaacgtgccagcattactgaggactacgtgatgttagaaacatactgtggtctaaagctg
atctatcaagggaatcatgaatccaaaactttgagcaagctaccttttccgcctgagagt
gatgaagttcagactgcaagcattttgaaagtcgctctacccgtttacagtaagtatgca
agtaagagtcgttctgacgcaaccgaaatcaagactgtcaatgaagaggaagatctgtac
aataacgtccaacaagactctaatggggacgtagaaatgcagcccaaggaggactcgacc
gaagagataaaatcgcaaacaacggaggactgtactgaagcatgctggctgttcacgacg
acgaggaatggaagctttcaaattcgagatctgccaacactggcgcttgtatacacagcg
gccaggatcgataccttacccgaaacgatctcagatgaggaaaaattcgacggtgatact
cagccggttgaactttttggtgccgtcgacgaagctgctccgccagaacaaattgcacac
atcttcggcttcctcactggcgcgatcgcgtcccgccctcatcttgcagtaatgctaaaa
aatggggcatttgcagtttatgaaattctcaccaactttacgattcctatccgactacct
gaaaaggaaggtcaccctgcagtgttcctgaaaaaagtgatcgcccgtcaattggaatct
atccaagatcacgatgagatacccgctgaacccgaagaccatgatatggaacaaagcagc
ccaaacgatgaggaaacaccttccaggagctttacatcaatcaagatggatggaaaattc
aaagggatttacctagcaggtcagccgccggtatggttgctatcaacggatcatggacca
tgcaggatctatgattctccggaaggaaagactattcagagtatcacgcagctatctgat
gggtttctgatgtctcttaccgagtcatcctttgagaatgaggatcagaccccagagagt
gaatcatcactctgggagacctttatatctgaatatgtttgctttgatcgagacatatca
tccacgctcgtcaagaccggtcgccctttcaacaaagtcttctacgattcatcctccgaa
accgtcgtgggtgcctcatatctagagaccgctttcgctaatttcgacgaagaaggcaat
ttaatgtggcagcctgatgatgattccttgattcgcgccaccactttcagaagctcattg
gaactgatactccctggcaaatgggtcaccattgatggttatgaattccaacaaaacgaa
tgggtgacgtcgatggccaatgttgaattggacactcggagtacagtttctgggaggcga
cagttcgttggcgttgggactacttgtaaccgagctgaagatcttgccgctcgtggggga
atttacgtgttcgaaattattcaagtcaatcgagctgagagacatcatgaatacaatcgg
gccttgagattacgttattacgaagagaccaaagcctgcgtgacagccgtagatgccatt
aacggatattttcttcacagtatgggacaaaaactgtacgctaaatgcttcgagcaggat
gagcgacttttggctgtaggctttctcgacatcaaaccgtatgcaacgtgtctgcggatc
ttcaaaaatttcatccttttaggggatgcggtgaaaggaataacattggtagcttttcag
gaagagccatataaactgatcgaactgggacacacttacgttgatcttaaatgttcaacg
gtcaacttcttggtgattgatgcgaaactagcaatcgtcgccaccgatctcaacgggatc
attcgaatcttcgaatacaacccaacaaatattgaatcccagggaggacaaaaattactt
tgtcggactgaatttaatacttctagtgagatgtcatgttcaatgcaattcggaaaaaga
ctttcaccgaaggacgaagcaaaagtgatgggtacattctttgccagtttggacgggtca
atcagttctctagtacccgcgaaagacgcagtttataaacgtctgcaactggtacaaact
cgtctcactagacatattcaacatttcgcggggttgaatcccaagggacatcgaactgta
cggaatgatatggtttcgagggcgatcaatagggggatcttggatggggaattactgatg
aaattcgacttactatcaattagtcaacagagggaaatcgctagtcttgcaggctcggat
agagaaactgttttagtcaaccttcaaaacttgaaaggtttatggtaa
DBGET
integrated database retrieval system
