Puccinia striiformis f. sp. tritici (wheat yellow rust fungus): Pst134EA_013942
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Entry
Pst134EA_013942 CDS
T09520
Name
(RefSeq) hypothetical protein
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
pstr
Puccinia striiformis f. sp. tritici (wheat yellow rust fungus)
Pathway
pstr03018
RNA degradation
pstr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pstr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Pst134EA_013942
09123 Folding, sorting and degradation
03018 RNA degradation
Pst134EA_013942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pstr03019
]
Pst134EA_013942
03041 Spliceosome [BR:
pstr03041
]
Pst134EA_013942
Messenger RNA biogenesis [BR:
pstr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Pst134EA_013942
mRNA degradation factors
5'-3' decay
Lsm complex
Pst134EA_013942
Spliceosome [BR:
pstr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
Pst134EA_013942
Complex C
U2 snRNP components
Pst134EA_013942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF1256
DUF150_C
Motif
Other DBs
NCBI-GeneID:
72028150
NCBI-ProteinID:
XP_047806817
LinkDB
All DBs
Position
7:complement(4841022..4841893)
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AA seq
96 aa
AA seq
DB search
MLIFSVFKTLTGQEVTIELKNDLAIQGTLASVDQFLNLKLENIKVLDQERHPHMMAVKNC
FIRGSVVRYVQIPKAAVDTQLLEDATRKEAANTAKR
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgttgatattctcagtgttcaagaccctcaccggacaagaagtgacaatcgaactcaag
aatgacttggccattcaaggaactttagccagtgtggatcaattcctcaacctcaaactc
gagaacatcaaagttcttgatcaagagaggcatccacacatgatggcagtcaaaaattgt
ttcattagaggctcagttgttagatacgttcaaattccaaaagctgcagttgatacacaa
ttactcgaagacgcaactcgcaaagaagctgcaaatactgctaagcggtaa
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