Puccinia striiformis f. sp. tritici (wheat yellow rust fungus): Pst134EA_019188
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Entry
Pst134EA_019188 CDS
T09520
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pstr
Puccinia striiformis f. sp. tritici (wheat yellow rust fungus)
Pathway
pstr03013
Nucleocytoplasmic transport
pstr03015
mRNA surveillance pathway
pstr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pstr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Pst134EA_019188
09122 Translation
03013 Nucleocytoplasmic transport
Pst134EA_019188
03015 mRNA surveillance pathway
Pst134EA_019188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pstr03019
]
Pst134EA_019188
03041 Spliceosome [BR:
pstr03041
]
Pst134EA_019188
Enzymes [BR:
pstr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pst134EA_019188
Messenger RNA biogenesis [BR:
pstr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Pst134EA_019188
Spliceosome [BR:
pstr03041
]
Complex C
Other components
EJC/TREX
Pst134EA_019188
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
Pst134EA_019188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DUF6329
Motif
Other DBs
NCBI-GeneID:
72030474
NCBI-ProteinID:
XP_047803110
LinkDB
All DBs
Position
10:1209669..1212394
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AA seq
433 aa
AA seq
DB search
MAEHAEDLIDYDEDDAGVAPTTAVTSTTNGATAPLNGKDQKGSYVGIHSTGFRDFLLKPE
LLRAISDLGFEHPSEVQQECIPQAILGMDVLCQAKSGMGKTAVFVTATLQQMDPKDGEVS
MLVLCHTRELAYQIKNEYARFSKYMPDIRTAVVYGGIPIKQDQEMLKAKDKCPHILVGTP
GRLNALVRDGLLKCNTVRTFVLDECDKMLESVDMRRDVQQVFLATPHAKQVMMFSATLSK
DIRPICKKFMQNPLEIYVDDEAKLTLHGLQQHFVKIDEAAKNRKLNDLLDTLEFNQVCIF
VKSVSRAVQLDQLLRDCNFPSIAIHSGLGQEERIDRYKQFKAFEKRILVATDIFGRGIDV
ERVNIVINYDTPGEADSYLHRVGRAGRFGTKGLAITFVSSEGDQTVLDAIQSRFEVAITE
LPDHIEASSYMNA
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacacgctgaagatctcattgactacgacgaggatgatgctggtgtcgcccca
accactgccgttacatctaccactaatggagcaaccgcacctctgaacggaaaggaccag
aagggttcctacgtcggtattcattccaccggtttccgtgatttcttgttgaaaccagag
ctattgcgagcaattagtgatctcggtttcgaacatccatccgaagtccaacaggaatgt
attccacaggcgatcttggggatggatgtattatgtcaagccaagtcaggaatgggtaaa
accgcggtatttgtgacagcaacattacaacagatggacccaaaagatggagaagtatcg
atgctagtcctatgtcatacacgtgaattggcctaccagatcaagaacgaatacgcaaga
ttcagtaaatatatgccagatatcagaacggctgtagtatatggtgggattccaatcaaa
caagaccaagagatgttgaaagcaaaggataagtgtcctcatatcttagtcggtacccca
ggtcgtctaaacgctctcgttcgcgacggtttattgaagtgtaataccgtcagaacgttt
gtactagatgaatgtgacaagatgctagaatcagttgacatgcgtcgggacgttcaacaa
gtatttttagcgactccccatgccaagcaggtgatgatgtttagtgcaacactaagcaaa
gatatccgaccgatttgtaaaaagttcatgcagaacccactggaaatttacgtagatgat
gaggctaagctcactctacacggtctccaacaacactttgttaagatcgatgaagcagca
aagaaccgcaaattgaatgacttattggacacacttgagttcaaccaagtttgtatcttc
gtcaagtcggtttcgcgggccgttcaactcgatcaacttttgcgtgattgtaactttcct
tcgatcgctattcattctggtttaggccaagaagagcgaatcgatagatacaaacaattc
aaagcattcgagaaacgtatcttggttgctactgatatctttggacgaggaattgatgtt
gaacgagtaaacatcgttatcaactatgatacaccaggagaggcggattcatacctccat
cgagtaggacgtgctggtcgattcggtaccaaaggtctagccatcactttcgtttctagt
gaaggtgatcaaaccgtactagacgctattcaatctagatttgaagtggctattactgaa
ctacctgatcatatcgaagctagctcttacatgaatgcttaa
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