Puccinia striiformis f. sp. tritici (wheat yellow rust fungus): Pst134EA_024690
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Entry
Pst134EA_024690 CDS
T09520
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pstr
Puccinia striiformis f. sp. tritici (wheat yellow rust fungus)
Pathway
pstr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pstr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pst134EA_024690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pstr03019
]
Pst134EA_024690
03041 Spliceosome [BR:
pstr03041
]
Pst134EA_024690
03009 Ribosome biogenesis [BR:
pstr03009
]
Pst134EA_024690
03016 Transfer RNA biogenesis [BR:
pstr03016
]
Pst134EA_024690
Enzymes [BR:
pstr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Pst134EA_024690
Messenger RNA biogenesis [BR:
pstr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
Pst134EA_024690
Spliceosome [BR:
pstr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
Pst134EA_024690
Complex C
U4/U6.U5 tri-SnRNP related factors
Pst134EA_024690
Ribosome biogenesis [BR:
pstr03009
]
Eukaryotic type
Pre-60S particles
Helicases
Pst134EA_024690
Transfer RNA biogenesis [BR:
pstr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
Pst134EA_024690
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Helicase_dom4_arc
Phage_tail_fib
Motif
Other DBs
NCBI-GeneID:
72033384
NCBI-ProteinID:
XP_047801032
LinkDB
All DBs
Position
13:3240592..3244713
Genome browser
AA seq
1044 aa
AA seq
DB search
MASSSKKRVPAAQPTTSASPKRSRGSSPTEQQHTGRRAKITNKQPVLVADEFQTEAARQI
DASRGLLPEQAGSGEEKTQLTLSHQVRHQVALPPNYNYIPISAHVPPSRPARTYPFTLDP
FQQVSITSIQRNESVLVSAHTSAGKTVVAEYAIAQCLENKQRVIYTSPIKALSNQKYREM
TAEFGDVGLMTGDVTINPSASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKER
GVVWEETIILLPHSVRYVFLSATIPNAMQFAEWICHTHDQPCHVVYTNFRPTPLQHYLFP
SGGDGIHLVVDEKGVFREDNFLKAMGSLNDSRGEDPANSMSGRNKQGKTKKGGTKGPSDI
YKIIKMIMVKNYNPVIVFAFSKRECEALAIQMSKLEFNSEEEKETVDTVFKNAISNLSED
DQGLPQIEHILPLLKRGIGIHHGGLLPILKEVIEILFQEGLIKVLFATETFSIGLNMPAK
TVVFTTVRKFDGQDFRSLSSGEYIQMSGRAGRRGLDDRGIVIMMCDEQLEPATAKNMVKG
DADRLDSAFHLGYNMILNLMRVEGVSPEYMLEKCFFQFQTHANLPLLENELRELQRMRSK
IVVADEELIGDYSKLKEELEIRNQDFRDVMNHPTHALPFLQPGRLVKVKFGTMDFGWGCV
VNFQRRLGDRGKPLGPETKPQESYIVDVLLKISAGKSTSKQPASKMIGVNQTSLIKPCEP
DEEGECAVVPVLLSTMDGISKIRIFLAQDLKPLDARKTAMDAIGEVKRRFPQGIGLLDPV
ENMGIVDETFKKLIKRIENLNGSIKDHKVISLADFKDQYKLYEEKQQVNKLIQQIQLKIS
NAENVIYIEDLKKRKTVLRSLGFCNSDDIVQVKGRVACEISSGDELLLTELIFNGAFNDL
SPEQCAALLSCFVFTEKSEQTTRLQNDLEEPMKKMKEAAKKIAQEIKSSGIEIKEEEYID
SFKTELMDVVFHWCKGSTFSEICKMTDIFEGSLIRCFRRLQELIRQMSCAAKSIGNEELE
TKFTQSLDCLERPSSVVYNPSLYL
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggccagtagcagcaagaaacgagtaccagcagcacaacccacgactagcgcatccccc
aaacggagtaggggaagctcaccaaccgagcagcagcacacagggcgtagggccaagata
acaaacaaacaaccagtactagtggcagacgaatttcagacggaagcagctcgacagata
gatgcaagcagaggactactacccgaacaggctggctcgggagaagagaaaacacaactc
acactttcacatcaagtccgacatcaagtagccctacctccaaactataactacatccca
atctcagcgcacgttcctccgagtagaccggcaaggacttatccattcacactcgaccct
ttccaacaagtctcgatcacatccatccaacgtaacgagagcgtgctcgtctcagctcat
acgagtgctggaaaaactgtggtggctgaatacgctattgcccaatgtctcgaaaacaaa
cagagagtcatctacacctctcccatcaaggctctcagtaatcagaaatatcgtgaaatg
acggccgagtttggggatgttggtttgatgacgggtgatgtgaccatcaacccaagtgca
tcgtgtctggtcatgactaccgagattttacggtcaatgttgtatcgtggatcggaagta
atgagggaagtagcctgggtgatctttgatgaaattcattacatgcgcgacaaggaaaga
ggagtagtttgggaagagacgatcatcctgttaccacattcagttcgatatgtatttcta
tcagcaacaatacccaatgcgatgcaattcgcagaatggatctgtcatacccacgaccaa
ccgtgtcatgtagtatacaccaacttccgaccgaccccattacagcattatctatttcca
tctgggggtgatggaatacatttggttgttgacgagaagggtgtgtttcgagaggataac
tttttgaaagcgatgggatccttgaacgattcgagaggcgaagatccagcgaattcgatg
tccggtcggaataaacaaggtaaaactaaaaaaggtgggactaaaggcccttcggatatc
tacaagattatcaaaatgatcatggtcaagaactataatcccgttatcgtcttcgcattc
tcgaagagggaatgtgaggccctagcgattcaaatgtctaaattagaattcaattctgaa
gaagagaaggaaacagtggacacggttttcaagaatgcgatctcaaacttatccgaagat
gaccaaggattaccacagatcgaacacatcttaccactcttaaaacgaggtatcggaatc
catcatggtggattattaccgatactcaaggaagtgatcgaaattctgtttcaggaagga
ctcatcaaagttttattcgctaccgaaacattctcgatcggtctgaacatgcccgcgaag
acagtagtattcacaaccgtacgaaagttcgatggacaagacttcaggagtttgagttcg
ggtgaatatattcagatgtcgggtcgagctggtcgtcgaggattagatgatcgagggatc
gtgatcatgatgtgtgatgaacaactcgaacctgcaaccgctaaaaatatggtcaaaggt
gacgccgatcgcttggattctgctttccatttgggctataatatgattctcaatttgatg
agagttgaaggcgtcagtcctgaatacatgttggaaaaatgtttctttcagtttcaaaca
catgccaatttacctctactagaaaatgagcttcgggagctgcaaaggatgcgatcgaag
atagtcgtagctgatgaagaattgattggggattattccaagttgaaagaagaactagag
atccggaaccaagacttcagggatgtgatgaaccatcctacgcatgccttaccgttccta
caaccgggaagattagtgaaagtgaagtttggaacgatggatttcggatgggggtgtgta
gtgaatttccaacggaggttaggtgaccgagggaaaccactgggaccagagaccaagcca
caggaaagttatatcgtcgatgttctattaaagatctccgctgggaaatcgacttcgaag
caacctgcctcgaagatgatcggtgtcaaccaaactagtctcatcaaaccttgtgagcca
gacgaggagggagaatgtgcggtggttccggtactcttgtcaactatggatgggatttct
aagatccgaatcttcctagctcaagatctaaaaccacttgatgctaggaaaaccgcaatg
gacgccattggggaagtcaagcgaaggttccctcaagggatcggtttattagatccggtc
gaaaatatggggatcgtagatgaaactttcaaaaaattaatcaaacgtatcgaaaatttg
aatggttcaatcaaagatcataaagttatctcattagctgacttcaaagatcaatataaa
ctgtatgaagaaaaacaacaagtcaataaattaattcaacagattcaactcaaaatttcg
aatgctgaaaacgtaatctatatcgaagatttaaagaaacgtaaaacggtgttgagaagt
ttaggattttgtaattcggacgatatcgttcaagtcaaaggaagagttgcgtgcgaaatc
tcttccggggatgaacttctgttgaccgagttgatcttcaatggagccttcaatgatcta
tctcctgaacaatgtgcagctctattaagttgctttgtttttacggaaaaaagtgaacaa
acgacaagacttcagaatgacttagaagaaccaatgaaaaagatgaaagaagcagccaaa
aaaatagcacaagaaatcaagtcatctgggatcgaaatcaaagaggaagaatatattgat
tcattcaagaccgaattgatggatgttgtatttcattggtgtaaaggttcaacattttct
gaaatttgtaaaatgactgatatattcgaaggatcactgattagatgttttagaagatta
caagaacttattcgtcaaatgtcgtgtgctgctaaatcgattggaaacgaagaacttgag
accaagtttactcaatctttggattgcttggaaaggccttctagtgtcgtttataacccc
tctttgtatctctaa
DBGET
integrated database retrieval system
