Plautia stali symbiont: E05_36880
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Entry
E05_36880 CDS
T03051
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psts
Plautia stali symbiont
Pathway
psts03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psts00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E05_36880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psts03019
]
E05_36880
03009 Ribosome biogenesis [BR:
psts03009
]
E05_36880
Enzymes [BR:
psts01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E05_36880
Messenger RNA biogenesis [BR:
psts03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E05_36880
Ribosome biogenesis [BR:
psts03009
]
Prokaryotic type
rRNA processing factors
E05_36880
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
BAN98454
LinkDB
All DBs
Position
2932980..2936207
Genome browser
AA seq
1075 aa
AA seq
DB search
MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE
RHGFLPLKEISREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALELPDGMGLIVRTAGVGKSAESLQWD
LSFRLKHWEAIKKAADSRPSPLLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQH
IAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID
INSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL
REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSI
LRLIEEEALKDNTKEVHAIVPVQVASYLLNEKREAVSAIEKRQGGVRAIIVPNDQMETPH
YSVLRVRKGEETQTLSYHLPKLHEAEMALPSEEEHAERRRPEQPALAAFVMPDAPPAPVE
VSEESQPAAVDVKAKPAVAAPATVSTGFVARLLGGLKKLFAGDAPAAAPAEEKTEAKTAD
GENTQQRGECRNNRRNNNNRRERTPRNGEHAQSREGREPREAREPRDQDNRRNKRQNDAR
GERPALTEEQLQQRDEQQQQRSERQRRRQEEKRAQQEPQVAEQVPVVDSVDDSVAQEDER
VQVMPRRKQRQLSQRVRVGEKADAIPAELPAAAVTEAVQENSQRAQLKEQAETAQDEQDD
SENRDGANMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSAMPLETAAASPEMASGKVWIT
YPVAQTHEQFTSNQALNEMPDYGYQDAAPAEELPVAVEAAAAAVAQPETPKPEVVHQAEP
QAHTEVPVVNTDDLTPVAAPVDHEPAVISAADEAVAQETAAEAQPAVTPAEETQPVVTEA
VSAAEQAPIEVSPAVEAQVEEVLSAPVAAEAPVAPVTEPHAPVAARDTEVSHVETRFKHH
ATAPMTKAPAPAWEPEPVRHSDWVRPAFNFKGRGSAGGHSATHQATAPATRPEST
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgttaatcaacgcaactcagcaggaggagttgcgcgttgcccttgttgacggacaacgt
ctgtacgatctggatatcgaaagccccggacacgagcagaaaaaagccaacatctacaaa
ggtaaaatcacccgtattgaacccagcctcgaggctgcgtttgttgattacggtgccgag
cgtcacggtttcctccctctgaaagaaatttcccgcgaatactttcctgctaattacaac
gcgcatggccgtccgaacatcaaagatgtgctgcgtgaaggccaggaagtgatcgtacaa
atcgataaagaggagcgcggtaataagggggcagcactgaccacctttatttcgctggcc
ggtagctatctggtgctgatgcccaacaacccgcgcgccgggggcatttcccgccgtatc
gaaggtgacgaccgtaccgagctgaaagaggcgctgtcagcgctggagctgccggacggc
atgggcctgatcgtgcgtaccgctggcgtcggcaaatctgccgaatcgctgcagtgggac
ctcagcttccgcctgaagcactgggaagccattaaaaaagccgcagacagccgcccgtca
ccgctcctgattcatcaggaaagtaacgtgattgtgcgcgccttccgcgactacctgcgt
caggatatcggtgaaatccttatcgataacccgaaagtgctggagctggcgcgtcagcac
atcgccgcgctcggtcgtccggacttcagcagcaaaataaaactgtacaccggtgaaatt
ccgctgttcagccattatcagatcgaatcgcagattgaatcggcgttccagcgcgaagtg
cgtctgccgtccggcggttctatcgttatcgacagcaccgaagcgctgaccgccatcgat
atcaactccgcccgcgctacacgcggtggtgatatcgaagagaccgccttcaacaccaac
ctggaagccgccgacgagattgcccgtcagctgcgactgcgcgacctcggtggtctgatt
gttatcgacttcatcgatatgacgccagtgcgccatcagcgcgccgtggaaaaccgtctg
cgtgaagcggtacgtcaggatcgggcgcgtatccagatcagccacatttcacgctttggt
ctgctggagatgtcgcgtcagcgcctcagcccgtcactgggtgagtccagccatcacgtc
tgcccgcgctgtagcggtactggcaccatccgtgataacgaatcgctgtcgctgtcgatc
ctacgtctgattgaagaagaagcgctgaaagacaacaccaaagaagtgcacgccattgtg
ccggttcaggtggcctcttacctgctgaacgaaaaacgtgaagcggtcagtgcgattgag
aaacgtcagggcggcgtgcgtgccatcatcgtgccaaacgatcagatggaaacgccgcac
tactcggtgctgcgcgtacgcaaaggtgaagagacgcaaaccctctcctatcacctgccg
aaactgcatgaagctgagatggcgctgccttcggaagaagagcacgctgagcgtcgtcgt
cccgagcagcctgcactggccgccttcgtgatgccggatgcaccaccggctccggttgaa
gtgagcgaagagagccagccggcagcggttgacgttaaagccaaaccggcggtcgcagca
cccgcgacggtcagcaccggttttgttgcgcgcctgctgggtggcctgaaaaaactgttt
gccggtgatgcccccgccgcagcccctgctgaagagaagaccgaagcgaaaacggctgac
ggtgagaatacgcagcagcgtggtgagtgtcgtaacaatcgtcgcaacaacaacaatcgc
cgcgagcgcacgccgcgtaacggtgagcatgcgcagagccgtgaaggccgtgagccacgt
gaagcccgcgagccacgcgatcaggataaccgccgtaacaagcgtcagaatgacgcgcgc
ggcgagcgtccggcgctgactgaagagcaactgcagcagcgtgatgagcagcagcaacag
cgttctgagcgccagcgtcgtcgtcaggaagagaagcgtgcgcagcaggagccgcaagtt
gctgagcaggtgcctgttgttgatagcgttgatgatagcgttgcgcaggaagacgagcgc
gttcaggttatgccgcgtcgcaaacagcgtcagctcagtcagcgcgtgcgcgtaggtgaa
aaagctgacgcgattcctgctgagctgcctgccgctgccgttactgaagcggtgcaggaa
aacagccagcgcgcccagctgaaagagcaagccgaaaccgctcaggatgaacaggatgac
agcgagaaccgtgacggggccaacatgccgcgccgttcacgtcgctcaccgcgtcatctg
cgcgtcagcggtcagcgtcgtcgtcgctatcgtgacgagcgttaccctacgcagtctgcg
atgccgctggaaacagcagctgcctcgccagagatggcgtcaggcaaagtgtggatcacc
tatccggttgcgcagactcacgagcagttcacctctaaccaggcgctgaacgaaatgcca
gactatggctatcaggatgccgcccctgcggaagaactgcctgtggctgtcgaagccgca
gccgctgccgtggcacagccagaaacgccaaagccagaagttgtgcatcaggctgaaccg
caggcgcacactgaggtgccggtggttaatactgatgacctgacgccagtggcggcaccg
gttgatcacgagccagcagtgatttccgcagccgatgaagcagttgcacaggaaaccgca
gcagaagcacaaccggctgttacgcctgccgaagagacgcagccagtcgttaccgaagcg
gttagcgcagcggaacaggctccgatcgaggtttcacccgcggtcgaagcgcaggtggaa
gaggtactgtccgcgccggtagcggccgaagcacctgtcgcgccggtgaccgaaccgcac
gcaccggttgccgcccgtgataccgaggtcagccatgtggagacccgctttaagcatcac
gctacggcaccgatgaccaaagcaccggcaccggcatgggaacctgagcccgtgcgtcac
agtgactgggtccgtccggccttcaacttcaaaggacgcggttcagccggtggtcatagc
gccacgcatcaggccaccgcaccggctacccgtccggaaagcacgtaa
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