Stutzerimonas stutzeri 28a24: CH92_05140
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Entry
CH92_05140 CDS
T03390
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pstt
Stutzerimonas stutzeri 28a24
Pathway
pstt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pstt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CH92_05140 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pstt03400
]
CH92_05140 (sbcB)
Enzymes [BR:
pstt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
CH92_05140 (sbcB)
DNA repair and recombination proteins [BR:
pstt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
CH92_05140 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CH92_05140 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CH92_05140 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AHL74508
UniProt:
W8R4V5
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All DBs
Position
1090857..1092284
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AA seq
475 aa
AA seq
DB search
MTPSIFWYDFETTGISPRCDRPLQVAGIRTNEALEEIGEPLNIYCRLSDDILPHPAACLV
TGITPLTLTEKGLCEAEFIARLHQELAQPGTCSAGYNTLRFDDEVLRYSLYRNFFDPYAR
EWQGGNSRWDLIDVVRTAYALRPEGIVWPEEDGRVTLKLERLSVANGLEHLQAHDALSDV
RATIALARLIRERQPRLYDYLYKLRRKNAVVEQIELLKPMVHVSGRFSAARHYMSVVLPL
AWHPRNRNALIVCDLNAECSPLWEDTAEELRERLYTRREELGERLPIPLKLVHVNRCPVL
APMNVLRKSDIDRLGLDLQCCESRASDLRSRQAEWSVKLADVYQEQAFANLSDPEQQLYD
GFLGERDRRLCEQVRSLAPSLSSSKVLSFDDARLPELHFRYRARNFPECLSAAEQLQWEE
FCRQRLIAPEFGAPNTLSQFESSLQALLVSASPNQVQLLQQWAVHARGLRERYVR
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgacacccagcatcttctggtacgactttgaaaccacaggcatctcgccgcgctgcgat
cgaccgttgcaggtcgctgggatccgcaccaacgaggcgttggaggaaattggcgagccg
ctgaatatttactgtcgtctcagcgacgacatcctgccgcaccctgccgcctgcctggtg
accggtatcaccccgctgaccctgacggaaaaggggttatgcgaagccgaattcattgct
cggctgcaccaggagctggcgcagccgggcacctgtagcgccggctataacaccttgcgt
tttgacgatgaggtgctgcgctatagcctgtaccgcaacttttttgatccctatgcgcgc
gagtggcagggtggcaatagccgctgggacctcatcgatgtggtccgcactgcttatgcg
ttgcgtccggaggggattgtctggcccgaggaagacggccgagtaacgctcaagctggag
cgcctcagtgtggccaacgggctcgagcatctgcaggcgcacgacgccttgtcggacgtg
cgggcgaccatcgccctggctcgattgatacgggaacgccagccgaggctctatgactac
ctgtacaagctgcggcgcaagaacgccgtggtcgaacagatcgagctgttgaagccgatg
gtgcatgtgtccgggcgcttttccgccgcccggcattatatgtccgtggtattgccactg
gcctggcacccacgcaatcgcaacgcgttgatcgtctgtgacctcaacgctgaatgctcg
cccctctgggaggatacggccgaagaacttcgcgagcggctgtatacccgccgtgaggag
ctcggcgagaggcttccgattcccctgaaactggtgcacgtcaatcgctgcccggtactt
gcacccatgaatgtcttgcgcaaatcggatatcgatcgattgggcctggatttgcaatgt
tgcgagtccagggcaagcgatctacgcagtcgacaagcagaatggagtgtgaaactcgct
gacgtctatcaggagcaggcgttcgccaacttgtctgatccggaacagcaactttatgac
ggctttctgggggagcgagatcggcggctgtgtgaacaggtcagaagcctcgcgccctcg
cttagttcgagtaaagtgctgtcgtttgatgatgcacgcctacctgaactgcattttcgt
taccgtgcgcggaatttccctgaatgcctttcggcagcggaacaactgcagtgggaggaa
ttttgccggcaacgtttaatcgcgcccgagtttggcgcgccaaacaccctgagtcagttc
gagagcagcctgcaggcgttactggtttcagccagcccgaaccaagtacagctcctgcaa
caatgggccgtacatgctcgcggcctgcgtgaacgctacgttcgctga
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