Stutzerimonas stutzeri 28a24: CH92_06845
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Entry
CH92_06845 CDS
T03390
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pstt
Stutzerimonas stutzeri 28a24
Pathway
pstt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pstt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH92_06845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pstt03019
]
CH92_06845
03009 Ribosome biogenesis [BR:
pstt03009
]
CH92_06845
Enzymes [BR:
pstt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CH92_06845
Messenger RNA biogenesis [BR:
pstt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CH92_06845
Ribosome biogenesis [BR:
pstt03009
]
Prokaryotic type
rRNA processing factors
CH92_06845
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AHL74835
UniProt:
W8QW45
LinkDB
All DBs
Position
complement(1448008..1451127)
Genome browser
AA seq
1039 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDFGAD
RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLDVPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWSAVKEASQDRPAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQNEALSFIQ
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINS
ARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREA
LEADRARIQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRL
IEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQ
RLRDDSPEIIAGQASYEMSPTEVEEAQPVSSTRTLVRQEAAVKTAPPRTAPAPTPAAAPA
EVAAPAAQEPSLFKGLVKSLVGLFAGKQEAPAAEVKQKPATSSRPQRNDERRSGRQQNRR
RDSRGNRDEERKPREERAPREERQAREERQPRXXXEERKPREAREPVEANDSPAQPQPRR
ERTPREDRQPREERKRELRAPLDEQAQIAPAPAVSEEVTERKPRPPREERKPRAEQTANA
EELQQNETAEVAQEEQESTEGSDRPRRRSRGQRRRSNRRDRQRDSNGNEIGDEAESNVAE
VSESNAPVKSEQVAIAATAAALAANTADTDAAPAAIQPETAPETPASVEAVDETANITEA
VQPAEVVAVPAAEATTPAIVEAEPAPAPQETSQPLAAEPEVVQAQVTPASEQPTPAPIEP
VTPALTATGRAPNDPREVRRRRLEQERLAKEAAEAEAKSAEANASAEAQAPAELASPEIV
VSEAVNVASVEQSIVDAVSSKEEQAVERAQPQTAEPEAEQAVTEVVQPDEVEPVKPTAEA
EPEVADEAAEQDDANKRQN
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgctaattaacgcaactcagcctgaagagttgcgtgtcgcactggtcgacggccagcgc
ctgttcgatctcgatatcgaatccggtgcccgtgaacagaagaaagccaacatctacaaa
ggcaagatcacccgtgtcgagcccagcctcgaagccgctttcgttgatttcggcgcagac
cgccacggttttcttcccctgaaagaaatctcccgcgagtatttcaagaaggcccccgaa
ggccgcgtcaacatcaaagacgtgctgagcgaaggccaagaagtcatcgtccaggtcgag
aaagaagaacgtggcaacaagggcgctgccctgaccaccttcattagtctggccggccgc
taccttgttctgatgccgaacaacccacgcgccggcggcatctctcgccgcatcgaaggc
gaggaacgcaacgaactccgtgaagcgctgaatggcctcgatgttcccgccgatatgggc
ctgatcgttcgaaccgctgggctcggtcgttcaagtgaagaaatgcaatgggacctggat
tacttgctgcagctctggagcgcggtaaaggaggcctcgcaggatcgccccgccccgttc
ctgatctatcaggaatccaatgtcattatccgcgccattcgcgactatctgcgccaggac
atcggcgaagtactgatcgatagcgtcgaagcccagaacgaagccctgtccttcatccaa
caagtcatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtgcctctgttc
aaccgcttccagatcgaaagccagatcgaaaccgccttccagcgcgaagtgaagctaccg
tccggcggatccatcgtcatcgacccgaccgaagcactggtgtccattgatatcaactcg
gcgcgcgccaccaagggcggcgatatcgaggaaaccgcgctacagaccaacctggaagcg
gccgaggaaatcgctcgccagctgcgtctgcgcgatatcggtggcctgattgtaatcgac
tttatcgacatgaccccggcgaagaaccagcgcgccgtggaagaaaaagttcgcgaagca
ctcgaggctgatcgcgcccgaatccaggtcggacgtatctcgcgcttcggcctgttggaa
atgtcccgtcaacgcctgcgtccgtcgctcggcgagaccagcggcatcgtctgccctcgc
tgtaatggtcaaggcatcattcgtgacgtcgagtcgctgtcgctggcgatcctgcgcctg
atcgaagaagaggcgctgaaagaccgcacggcagaggttcgcgcccgcgtcccgttccag
gtcgccgcattcctgctcaacgagaagcgcaacgccatcaccaagatcgaattgcgcacc
cgcgcgcgcatcttcatcctgccggacgatcatctggaaacgccgcacttcgaagtgcag
cgtcttcgcgatgacagcccggagatcatcgcgggtcaggccagctacgagatgagcccg
accgaagtcgaggaagcccaaccggtcagctcgacacgcacactggttcgccaggaagcg
gcggtgaaaactgcccctccacgaacagcgcccgcacctacgcctgccgccgcgccagca
gaagtcgccgcgccggccgcccaggagccgagcctgttcaaagggctggtcaaatcgctg
gtcggtctcttcgccggcaagcaggaagcaccggctgctgaagtgaagcagaagcccgcg
accagcagccgtccgcagcgcaacgacgagcgccgtagcggccgccagcagaaccgtcgc
cgtgattcacgcggcaatcgcgacgaagaacgcaagccgcgcgaagagcgcgccccacga
gaagagcgtcaggctcgcgaggaacgtcagccacgccstymkygtgaagagcgcaagcca
cgcgaagcccgcgagccggtcgaggccaacgatagcccggcgcagccacaaccgcgtcgc
gagcgcacgccgcgcgaagaccgtcagccccgcgaagagcgcaagcgcgaattgcgcgca
ccgctcgacgaacaagcccagattgcaccagctcctgctgttagcgaggaagtcaccgag
cgtaaaccacgcccacctcgcgaagagcgtaagcctcgggcagagcaaaccgcaaacgcg
gaagaactgcagcaaaatgagactgcggaggttgctcaagaggaacaggaatcgaccgaa
ggcagcgatcgtccgcgtcgccgctcccgtggtcagcgtcgccgcagcaaccgccgtgat
cgccagcgtgattccaacggcaatgagattggtgacgaggccgagagcaacgttgccgaa
gtcagcgaaagcaatgcgcctgtgaaatccgagcaggttgccatcgccgcgaccgcggcc
gccctggcggcaaatacggccgataccgacgcagcgccagcggctatccagcctgagacg
gccccggaaacaccagcatcagtcgaagccgtcgacgaaacagccaatataaccgaagcg
gtacagccagccgaagttgtcgcagtgccagcagccgaagccacgacgccggccatcgtg
gaagccgagccagcccctgccccgcaggaaaccagccaaccgttggcagctgagcctgag
gtcgtgcaggcccaggtcacgccggcgtccgagcagcctactccggcgccaatcgagccg
gtaacaccagctctgacggcaaccggccgtgcgcccaacgacccacgcgaagtacgtcgt
cgtcgcctcgagcaggagcgtctggccaaagaggcagccgaagccgaggcgaaatccgcc
gaagcgaacgcttcagccgaagcacaggcgccagcggagctggcaagccctgaaatcgtt
gtcagcgaggcggttaatgttgcatcggtcgagcaatcaatcgtcgatgcggtcagcagc
aaggaagagcaggccgttgaacgggcgcaaccacaaacggccgaaccagaagccgaacag
gccgtcacagaagttgttcagcccgacgaggtggagccggtcaagcccactgcggaagct
gagcctgaggtagccgacgaagccgccgagcaggatgacgccaacaagcgccagaactga
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