Stutzerimonas stutzeri 28a24: CH92_13950
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Entry
CH92_13950 CDS
T03390
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pstt
Stutzerimonas stutzeri 28a24
Pathway
pstt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pstt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH92_13950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pstt03019
]
CH92_13950
03009 Ribosome biogenesis [BR:
pstt03009
]
CH92_13950
Enzymes [BR:
pstt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CH92_13950
Messenger RNA biogenesis [BR:
pstt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CH92_13950
Ribosome biogenesis [BR:
pstt03009
]
Prokaryotic type
rRNA helicases
CH92_13950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HrpB7
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AHL76137
UniProt:
W8RCF6
LinkDB
All DBs
Position
complement(3015548..3017209)
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AA seq
553 aa
AA seq
DB search
MTQEIGGFAALGIHPSVLAAVIAVGYEEPSAIQSQAIPVILGGHDMIGQAQTGTGKTAAF
ALPILSKIDPAKREPQALILAPTRELALQVATAFETYSKQMPGVGVVAVYGGAPMGPQLK
AIRQGAQIIVATPGRLVDHLSRNSALLSTIQYLVLDEADEMLKLGFMDDLEVIFEAMPES
RQSVLFSATLPHSIRAIAEKHLREPQHIKVATKTQTVARIEQAHLMVHADQKIAAVLRLL
EVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVSRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTNQKVAEARLPNAQQVLDARIKKLTNSLAPLVADAEASHGELLDKLVADIGCSPRAL
AAALLRKATNGQALTLAEVEKEQPLVPTSSPRERSDRPERSGDRERRAPIPLAEGRARCR
TALGARDGIAARNLLGAILNEGGLAREDIGRIQVRDSFSLVELPEEGLERLLGKLKDTRV
GGKQLKLRRYRED
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggctttgccgcactcggtattcatccatccgtcctcgctgca
gtcatcgcagtgggctacgaagagccttcggcgatccagagccaggctatcccggtaatc
ctcggcggccacgacatgatcggccaggcccagaccggcaccggtaagaccgcagcattc
gcgctgcccattctgtccaagatcgacccggccaagcgtgagccacaggcgctgatcctc
gcgccgactcgcgaactggcgctgcaggtcgccaccgcgttcgaaacctactccaagcag
atgccaggcgttggcgttgtcgccgtttacggtggcgcgccgatgggcccgcagctcaag
gccatccgtcagggcgcgcaaatcatcgtcgccactccgggtcgtctggttgaccacctg
agccgcaacagcgcgctgctgtcgaccattcagtatctggttctcgacgaagctgacgaa
atgctcaagttgggcttcatggatgacctcgaagtcatcttcgaggccatgccggaaagc
cgtcagagcgtactgttctccgcgaccctgccgcattcgattcgcgcaatcgccgaaaag
cacctgcgcgagccgcagcatatcaaagtcgccaccaagacccagaccgtcgcccgtatc
gagcaggcacacctgatggtccatgccgaccagaagattgcagctgtgctgcgcctgctg
gaagtcgaagacttcgacgcgctgatcgctttcgtgcgtaccaagcaggcgacgctggat
ctggccgccgcattggaagccaagggctacaaagccgctgcactgaacggtgacatcgcc
cagaaccagcgcgagcgcgtcatcgagtcgctcaaggatggtcgtctggacatcgtcgtc
gctactgacgtcgctgcccgcggcctcgacgtttcgcgtatcacccacgtattcaacgta
gacatgccatacgatccggagtcctacgtgcaccgtatcggccgtaccggtcgtgccggt
cgtgaaggccgtgcgttgctactggttacgccgcgtgagcgccgtatgctgcaggtcatc
gaacgcgttaccaaccagaaggttgccgaagctcgcctgccgaatgctcagcaagtgctg
gatgcgcgcatcaagaagctcaccaacagcctcgcgccgttggtagctgatgcagaagcc
agccatggcgaactgctcgacaagctggtagctgacattggttgctccccccgcgccctg
gctgccgcactgctgcgtaaagccaccaacggtcaggcgttgaccctggcggaagtcgaa
aaagagcaaccgctggtcccgaccagcagtccgcgtgagcgctccgatcgtcccgagcgc
agcggcgatcgtgagcgtcgtgccccgatcccgttggctgaaggccgcgcccgttgccgt
accgcgctgggtgcccgtgacggcatcgctgcgcgcaacctgctcggcgccatcctcaac
gaaggcggcctggctcgtgaagacatcggtcgcattcaggtgcgtgacagcttcagcctg
gtcgagctgccggaagaagggctggaacgcctgctgggcaagctcaaggacacccgcgtc
ggcggcaagcagctcaagctgcgccgctatcgcgaggattga
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