Stutzerimonas stutzeri 28a24: CH92_17990
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Entry
CH92_17990 CDS
T03390
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pstt
Stutzerimonas stutzeri 28a24
Pathway
pstt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pstt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH92_17990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pstt03019
]
CH92_17990
03016 Transfer RNA biogenesis [BR:
pstt03016
]
CH92_17990
Enzymes [BR:
pstt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CH92_17990
Messenger RNA biogenesis [BR:
pstt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CH92_17990
Transfer RNA biogenesis [BR:
pstt03016
]
Prokaryotic type
tRNA degradation factors
CH92_17990
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
TRAM_2
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
AHL76871
UniProt:
W8RXN9
LinkDB
All DBs
Position
complement(3871966..3874491)
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AA seq
841 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELIIQHLSERGSPAAREQLVEEFGLSSEDDIEALR
RRLRAMERDGQLIYTRRGTYAPVDKLDLVCGRVSGHRDGFGFLIPDDGSDDLFLSPAQMR
LVFDGDRCLARVAGLDRRGRREGAIVEVISRAHETIVGRYQEESGIGFVMADNPKIQQEV
LVTPGRSMDAKPGQFVEIKITHWPTQRFQPQGDVVEVIGNYMAPGMEIDVALRSFDIPHV
WPDAVKREAAKLKPEVEEKDKHKRVDLRHLPFVTIDGEDARDFDDAVYCEKLSGWKLFSG
GFRLYVAIADVSHYVKVGSALDQEAEVRGTSVYFPERVVPMLPEELSNGLCSLNPHVDRL
AMVCEITLSKSGKMTDYQFYEAVIHSHARLTYNKVSSMLEQPSSAEGKRLVGEYGEVLPH
LKQLYALYKVLLKARHTRGAIDFETQETRIVFGAERKIAAIKPTERNDAHKLIEECMLCA
NVATARFLQDHDIPGLYRVHDGPPLERQEKLRAFLGELGLSLHKGKEGPTPKDYQALLER
IQGRPDFHVIQTVMLRSLSQAVYSPDNNGHFGLNYEAYAHFTSPIRRYPDLLIHRAIRSV
IRSRRDTSHVRREGATSMPKARIYPYDEAALEQLGEQCSMTERRADEATRDVVNWLKCEF
MKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTAMPGDYYHFDPLHHRLSGERSGR
SFRLGDSVEVRVMRVDLDERKIDFELISGGSKTESRESGSADNRGARKDNRSKKGAESSK
GREPVSADVRKSREMKKALLSDAKSGAAKSKPKRSSAKPKTSSKSPSKPDGGAPRKRKAK
S
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaatccctcgaccccgaggccgcacgtgaagcggaaaagtacgaaaac
cctattccaagtcgcgagctgattattcagcacctgagtgagcgcggctcaccagcggcg
cgtgagcagctggtggaagagttcggattatcctccgaagatgatatcgaggctctgcgc
cgccgtttgcgtgcgatggagcgtgacggtcagctgatctacacccggcgcggcacttat
gccccggtggacaagctggacctggtttgtggtcgcgtcagcggccatcgcgacggtttc
ggttttctgattcccgatgatggcagtgatgatctgtttctgagccctgcacagatgcgc
ctggtgttcgatggtgatcgctgtctggcccgggtggccgggctcgatcgccgcggtcgc
cgcgaaggtgccatcgtcgaagtgatcagccgcgcgcatgaaacgattgttgggcgctat
caggaagaaagcggcatcggtttcgtcatggccgataaccctaagatccagcaggaagtt
ctggtgacaccgggtcgctcgatggatgccaaaccggggcagttcgtcgaaatcaagatc
actcactggccgactcagcgttttcagcctcagggcgacgtggtcgaagtgatcggcaac
tacatggcgccgggcatggagatcgacgttgcgctgcgcagcttcgatattccccacgtt
tggcctgatgcggtgaagcgtgaagcggccaagctaaagccggaagtggaagagaaggac
aagcacaagcgtgtcgacttgcggcaccttccgttcgttaccatcgatggcgaagatgca
cgcgacttcgatgatgccgtctattgcgaaaagctcagcggctggaagctgttttccggt
ggtttccgcctgtatgtggccatcgccgacgtgtcgcactatgtgaaagtgggctcggca
ctcgatcaggaagctgaagtgcgtggcacctctgtgtatttccccgagcgggtggtaccg
atgctgccggaagagctttccaacgggctctgctcgctgaatccgcacgtcgatcgtctg
gccatggtctgcgaaatcaccctgagcaaatcggggaagatgaccgactaccagttttac
gaagccgtcatccattcccacgcgcgactgacctataacaaggtcagcagcatgctggag
cagccgtcatcggcagagggcaagcgcctggtcggtgagtacggcgaagtacttccacac
ctcaagcagctgtatgcgctgtacaaggtgttgctcaaagcgcgtcacacacgcggtgcg
atcgacttcgaaacccaggaaacgcggatcgtgttcggtgccgaacgcaagatcgcggcg
atcaagcctaccgaacgcaacgatgcgcacaagctgatcgaggaatgcatgctgtgcgcc
aacgtggccacggcgcgcttcctgcaagatcatgacattcccggcctgtatcgcgttcac
gatggtcctccactggaacggcaggagaaactgcgggccttccttggcgagctgggtctg
agcttgcataagggtaaagaggggccaaccccgaaggattatcaagcgttgctcgagcgc
attcaggggcgccccgatttccatgtgatccagacggtgatgctgcggtcgctcagtcag
gcggtctatagcccagacaacaacggccacttcggtctgaactacgaggcctatgcacat
ttcacctcaccgatccgtcgctatccggatctgctgatccatcgcgcgatccgcagtgtg
attcgctcacgccgcgacacctcccatgtgcggcgcgagggtgcgaccagcatgcccaag
gctcgcatctatccgtacgacgaggcggcgctggaacagttgggtgagcagtgctcgatg
acagagcgccgcgccgacgaggcgacccgcgacgtggtgaattggctcaagtgcgagttc
atgaaggaccgagtcggtgaaagcttccctggcgtcattacggcggtcaccgggttcggc
ctgttcgtcgaattgaccgatatctatgtcgagggcctggtgcatgtgaccgccatgccc
ggcgattactaccacttcgatccgttgcatcatcgcctctctggcgagcgcagcggccgc
agtttccgtctcggtgacagcgtcgaagtgcgggtaatgcgtgtcgatctagacgagcgc
aagatcgacttcgagttgatcagtggtggtagcaagaccgagagccgcgaatccggctcg
gcggataaccgcggcgcacgaaaggataatcgcagtaagaaaggcgccgaatcgtcaaaa
gggcgtgagccagtcagtgccgatgttcgcaaaagtcgcgaaatgaaaaaggcgttactg
tctgacgcaaaaagtggcgcagcgaagagcaagcccaaacgcagctcggcgaagcccaag
acgtcgagcaaatctccatccaagccggatggcggtgcgccgcgcaagcgtaaggccaag
tcatga
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