Stutzerimonas stutzeri 28a24: CH92_20135
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Entry
CH92_20135 CDS
T03390
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pstt
Stutzerimonas stutzeri 28a24
Pathway
pstt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pstt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CH92_20135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pstt03400
]
CH92_20135
Enzymes [BR:
pstt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CH92_20135
DNA repair and recombination proteins [BR:
pstt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CH92_20135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Viral_helicase1
SH3_13
UvrD-helicase
Helicase_RecD
AAA_22
SLFN-g3_helicase
UvrD_C
AAA_16
nSTAND3
AAA_28
CbiA
DEAD
PhoH
Flavi_DEAD
DUF87
ATPase
Motif
Other DBs
NCBI-ProteinID:
AHL77263
UniProt:
W8RC28
LinkDB
All DBs
Position
complement(4340848..4342698)
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AA seq
616 aa
AA seq
DB search
MTVLSGLPLGPLERAFIASLQRLEPETPDMVLLAAALCCEALASGDVCLPLARQAGKRPW
PEVDFSLPPLAAWRAQLAASPLIGSPGDYAPLILADNRLYLARYQAYEQQLAEQLLARAA
DTPEVDEGQLSDSLERLFAFNEQSPDWQRLAAAQAVRRRLAVISGGPGTGKTTTVVRLLA
ALLEQPGGERLAIGLAAPTGKAAARMAEAIRNAKADLPISAALKDALPDEARTLHRLLGS
RGDSPRVRHDAANPLALDVLVVDEASMVDLALMAKLVTALPPKARLILLGDKDQLAAVEA
GAVFAELCEGRGFDAQAAADLERITGQRVPTETPGSRLGDAVVLLTHSHRFAGDSGIGEL
ARRINGGDAKGTVALLQENRSDLAWNATPSPTSLIERLEQGYAAYLQAARQSEPAAAFAT
FNGFRALTAQREGAFGVTGINEALEARFKRRLGVPARERWYPGRAVMVRQNDYALGLFNG
DIGLCLKTEQGLRVFFEGDDGYRGFAPARLPSHDSAFAMTVHKSQGSEFAEVLLALPEQP
SPLLTRSLFYTGITRAKRKVEIWALPARLAEAVNTRAERAAGLAERLSLGGAKPTTEASS
MPTLASEPAGDQLSLF
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgacggttctgtctggtctgccgttaggcccactggagcgggccttcatcgccagcctt
cagcgcctcgagccggagacgccggacatggtcctgctcgccgccgcgctctgctgcgaa
gccctggcgtccggggatgtctgcctcccgctcgcacgccaggctggcaagcgcccctgg
cctgaagtcgacttcagtctgccgccgctcgcagcctggcgcgcgcaactggcggcatcg
cctttgatcggctcgcccggcgattacgcgccgctgattcttgccgataatcggctttat
ctggcccgttatcaggcatatgaacagcagctggcggaacagctgctggcccgtgcggcg
gatacaccggaggtggacgaaggacagctaagcgacagcctcgagcggcttttcgccttc
aacgagcagagccccgattggcagcgtttggctgcggcacaggcggtgcgcaggcgcctg
gccgtgatctccggcggccctggtaccggcaaaaccaccaccgtggtgcggctgctggcg
gcactgctggagcagccgggcggcgaacgcctggccattgggctcgcggcacccacaggt
aaggcggcggcgcggatggccgaagcaatccgcaacgccaaggccgatctgccgatcagc
gctgcgctcaaggatgcattgccggacgaggcgcgcacgcttcatcgcctgctcggcagc
cgcggcgacagtccccgggtgcgccacgatgcggccaatccgctggcgctggacgtgctg
gtggtagacgaggcgtccatggtcgatcttgcgctgatggccaaactggtcacagcactg
ccgcccaaggcccgcctgatcctgctgggcgacaaggaccaactggcagcggtggaagcc
ggtgcggtgttcgccgagctttgtgaagggcgcggattcgatgcccaggcggcggccgac
ctggaacgcatcaccggccagcgcgtgccaaccgagacgccaggttcgcgtctcggcgat
gcggtggttctcctgacccacagccatcgcttcgccggcgacagcggcatcggcgagctg
gcgcggcggatcaacggcggcgatgccaagggcacggttgcactgctgcaggaaaatcgc
tcggatttggcctggaacgcgacgcccagccccacgtcactgatcgagcggttggagcag
ggttacgccgcctatctgcaagccgcacggcaatcggagccggccgcagcctttgcaacc
ttcaatggctttcgcgccctgaccgcccagcgtgaaggcgcctttggcgtgaccggtatc
aacgaagcgctagaagcgcgcttcaagcgccgcctcggcgtgccggcgcgtgaacgttgg
tatcccggccgcgcggtgatggtccgccagaacgactatgcgctggggctgtttaacggt
gacatcggcctgtgcctgaaaaccgagcagggcctgcgggtattcttcgagggggacgat
ggttatcgcggcttcgccccggcacggttgccgagccacgacagcgccttcgccatgacc
gtgcacaagagccagggctcggaattcgccgaggtactgctggcgctccccgagcagccc
agcccgctgctgacgcgctcgctgttctacaccggtatcacccgtgccaagcgcaaggtg
gaaatctgggcgttgccggcgcgtctggctgaggcggtcaatacccgcgccgagcgcgcg
gctggactcgccgagcgactgagtctgggcggcgcgaagcccacaactgaggcatcgagt
atgccgacgctggccagcgaaccggcaggcgatcagctcagcttgttctga
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