Stutzerimonas stutzeri 28a24: CH92_20705
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Entry
CH92_20705 CDS
T03390
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pstt
Stutzerimonas stutzeri 28a24
Pathway
pstt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pstt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH92_20705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pstt03019
]
CH92_20705
03400 DNA repair and recombination proteins [BR:
pstt03400
]
CH92_20705
Enzymes [BR:
pstt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CH92_20705
Messenger RNA biogenesis [BR:
pstt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CH92_20705
DNA repair and recombination proteins [BR:
pstt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CH92_20705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
EccE
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AHL77369
UniProt:
W8R421
LinkDB
All DBs
Position
complement(4467957..4469882)
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AA seq
641 aa
AA seq
DB search
MIEQTLKQTFGYDGFRPGQEQAIRTVVAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVV
SPLLALMQDQLAFLHRHGIAAASIDSAQSREQANETMTRAKSGELKILMISVERLKNERF
RHFISQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQTLLLTATATPPVIAD
MQAKFAIAAQDVVTTGFYRPNLSLLVEPVSGFNKQRRLVEWLADKGGQPTIVYVTQQKTA
EQVAEHLASRGFPASAYHAGMAHELRESIQRRFMSGELNCIVATIAFGMGIDKSDIRNVV
HYDLPKSVENYSQEIGRAGRDGEPSDCLVLANRDSLNVLQNFVYGDTPEREGIRCVLDEL
LQAGSNGQWELMLNQLSDQSNIRQLPLKTLLVQLELRGIIAPRFAYFAEYRFKYLLEPEV
LLAKFEGERRQFVEAIVHSSAWARTWCTLDFDALYQQHGADRARVVKALEYFQEKGWIEL
ESKQMTDVYALLDSSFDTDALSTELHAYFKQHETSEITRIDNMLALFESRECLSQRLAAY
FGDRRAPLQCGHCSVCRGQVAELPEPPSLAPLADVDVAGRCADFSQRYRQLKAGAPTAEC
LTRFLCGISVPVFTKLKARQISGFGSLEAYPYAEVRERLAR
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaacagaccctcaagcaaaccttcggctacgacggctttcgccctggccaggaa
caggccattcgcactgtggtggccgggcgctcggctgccgcgattttcccgaccgggtca
ggcaagtcgctgtgttatcagctaccggcgctgctgctaccgcacctgacgttggtcgtc
tcgccgctcttggcgctgatgcaggaccaactggcctttctgcaccgccatggaatcgcc
gcggccagcatcgattctgcacagagccgcgagcaggccaacgagaccatgacgcgcgcc
aagtcgggcgagttgaaaatcttgatgatttcggtggagcgcctgaagaacgagcgcttc
cgccacttcatcagtcaggtgccgatctcgcttttggtggtagacgaggcgcactgcatc
tccgaatggggacataactttcgcccggactatctcaagcttccggactaccagcgccaa
ttcaacattccacaaacactgctgcttaccgccacggcgacgccaccggtcatcgccgac
atgcaggccaagttcgccattgctgcgcaggacgtggtgaccaccggattctatcggccg
aacctcagcctcctggttgagccggtcagcgggttcaacaagcaacggcggctggtggaa
tggctggcagacaagggcggccaaccaaccatcgtctacgtcactcagcagaagaccgcc
gagcaggtcgctgaacatttggcgtcgcgaggctttcccgccagtgcctaccacgcgggc
atggcccacgagctgcgcgaatcgatccagcgccgcttcatgagtggcgagctcaactgc
atcgtcgccaccattgccttcggcatgggtatcgacaagtcggatatccgcaacgtggtg
cactacgacctgcccaagtcggtggaaaactacagccaggaaatcggccgggccgggcgc
gacggcgaaccgtcggattgcctggtactggccaatcgcgacagcctcaacgtgctgcaa
aacttcgtttatggcgacacgccggaacgcgagggcatccgctgcgtgctcgacgagctt
ttgcaagcgggctcgaatgggcaatgggagctgatgctcaaccagctgtccgatcagagc
aacatccgccaattgccgctgaagaccctcctggtgcaactggaactgcggggcatcatc
gccccacgcttcgcttatttcgccgaatatcgcttcaagtatttactggaaccagaggtg
ctgttggcgaagttcgagggcgagcggcggcagtttgttgaggccatcgtgcacagctcg
gcgtgggcgagaacctggtgcactttggatttcgatgcgctctatcagcagcacggcgcc
gaccgcgcccgggtggtcaaggcgctggaatacttccaggagaaaggctggatcgagctg
gaaagcaagcagatgaccgatgtctatgcgctgctggactcgagcttcgataccgacgct
ttgagtaccgagctgcatgcctacttcaagcagcatgaaacaagtgagatcacccgcatc
gataacatgctggcgctgttcgaatcgcgcgaatgcctcagccaacggctggcggcctac
ttcggcgaccggcgggcgccgctgcagtgtggtcactgctcggtctgccgcggccaggtg
gcggagcttcccgaaccgccgtccctggcgcctctcgctgacgttgatgtggcgggccgg
tgcgcggatttcagccagcgttaccggcaactcaaggccggcgcgcccaccgctgaatgc
ctgacgcgctttctctgcggcatcagcgtgccggtgttcaccaagctcaaagcacggcag
atctccggtttcggctcgctggaggcctatccctacgccgaagtgcgcgagcggctggcg
cggtag
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