Entry |
|
Name |
(GenBank) exodeoxyribonuclease V subunit gamma
|
KO |
|
Organism |
pstu Stutzerimonas decontaminans
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:pstu00001]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
UIB01_01065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:pstu03400]
UIB01_01065
Enzymes [BR:pstu01000]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
UIB01_01065
DNA repair and recombination proteins [BR:pstu03400]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
UIB01_01065
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
214021..217290
|
AA seq |
1089 aa
MLSLYHAPDLETLGELATRLLAQPLADPFAPALVVVPSQGMGRWLTLELARKQGIAMQLE
IQLPAKFVWDLSRTVLGSLPEQSAFSPTTLTWRLYGWLCEPANLELAPRLAQYLDGGDER
RRLSLAAKIADVFDQYLLYRDDWLAAWERGETFDLGPDEAWQALLWRELTKDGHPHRARL
LGDLLQGLYSDEPLPGLPERLLVFGISSLPPHHLRVLDGLARHIDVVVCALNPSREAWGE
IRDIRELARQPESGADDWYLDVGHPLLASLGKQGRDFFDSLFSLTASEGSQEFGLYSEDE
DLRDDSLLHALQNDILRLRTRLPDERITLAEDDRSLEVHIAHSPLREVEILHDQLLARFA
ANPALTPDQVVVLTPDIERYAPFIEAVFAPREGSPRIPYSLADRSLRAEMPLIEAFLELL
MLAQSRFTAEEVLAWLEQPAIARRAGIESEDLPLLRDWLREAGVRWGRDGSQRARLGLPD
ESAFTWRQGLDRLLLGFAAPPQLAGDHAPLLGEHWPLDALEGARGQLLGRLVEFVERLGV
LADQLARPRPLAEWADDLQILIDTLFDEREAGDTLLLLSQACAALRDQAQAADLTRPIEL
ELVHQQLSAALQQGGGASGFLTGAVTFCTMVPMRSLPFRVVCLLGLDDGAFPRRTPPSGF
DLIGRHPRRGDRARRLDDRYLLLETLLSAREALYLSYVGRDPRDNAVLPPSVLLSEVLEA
VDMTAVLADGTKPVSQQILVAHPLQPFSPRNFGDGLCAGFSSPWFRAAGRLAEPPQTQPQ
PFASLLAEPDEAWLTIEPSQLLQCFRHPARFLLEQRLGLRLADDQESLASDEPFDLEMPA
WNGLRRLSLQAMEHGWSDEDERRMACAAGWLPTGELGQALWGKLRGPVRAFAPRLFELRP
DAVPEPLPVDITLAGVRVHGWLDGVTPAGLFGWKLGRLGEWDLPPFWLRHLLLNLSATPG
IERHSLMLSPAGDWQLGPLANAAELLEPWLEAYRCAIREPLPLLPRSSHAFAKGYRKPSR
GSEPLDCARKRAREAWLGAEFSPIAAEAEDPWNMLAFRDRDPLDQRFETLAQELIGPALD
ALAEDEEEA |
NT seq |
3270 nt +upstreamnt +downstreamnt
atgctcagcctctaccacgctcccgatctggaaaccctcggcgaactggccacgcgcctg
ctcgcccagccactcgccgatcccttcgctccggcgctggtggtggtaccgagccagggc
atggggcgctggctgacgcttgagctggcgcgcaagcagggcattgccatgcagctggag
attcagctgccggccaagttcgtctgggacctcagccgcaccgtactgggcagcctgccg
gagcaatcggcgttctccccgacgaccctgacctggcgcctctatggctggctttgcgag
ccggccaatctcgagctggcgccgcgtctggcgcagtacctcgacggcggcgatgagcgc
cggcggctgtcgctggcggcgaagatcgccgacgtctttgaccagtatctgctctatcgc
gacgactggctggcggcctgggaacgtggcgaaaccttcgatctcggcccggacgaagcc
tggcaggcgctgctctggcgcgaactgaccaaggacggccacccgcaccgcgcacggctg
ctcggcgatctgctacaggggctctacagcgacgaacccttgcccggtctgcccgagcgc
ttgctggtgttcggcatcagtagcctgccgccgcaccatctgcgcgtgctcgacggcctg
gcgcggcatatcgacgtagtggtctgcgcactcaaccccagccgcgaggcctggggcgag
attcgcgatatccgcgagctggcgcgccagcccgagagtggggctgacgattggtatctc
gacgtgggtcatccgctgctggccagtctcggcaagcagggccgcgatttcttcgattcc
ttgttcagcctgaccgccagcgaaggcagccaggaattcggcctgtattccgaagacgaa
gacctgcgcgatgacagcctgctgcacgcgctgcagaacgacatcctgcgcctgcgcacc
cgcctgccggatgagcgcatcacgctggccgaggatgaccgttcgctggaagtgcatatc
gcccattcgccgctgcgcgaggtagagatcctgcatgaccagctgctggcgcgtttcgcc
gccaacccggcgctgacgcccgatcaggtggtggtgctgacccccgatatcgagcgttac
gcgcccttcatcgaagccgtgttcgccccgcgcgagggcagtccgcggattccctacagc
ctcgccgaccgcagcctgcgcgccgaaatgccgctgatcgaggccttcctcgaactgctg
atgctggcgcagagccgtttcaccgccgaggaagtcctcgcctggctggagcagccggcc
attgcccggcgcgccgggatcgaaagcgaagacctgccgctgctgcgcgactggctacgc
gaagccggcgtgcgttggggccgtgacggcagccagcgggcccgtctcggcctgccggac
gagtcagcctttacctggcgtcaggggctggaccgcctgctgctgggctttgccgcgccg
ccgcaactggctggcgaccacgcgccactgctcggcgagcactggccgctggacgcactg
gaaggcgcgcgcgggcagttgctcgggcggctggtggagttcgtcgaacgcctcggcgtc
ttggccgatcagctggcgcggccgcgtccgttggccgagtgggccgatgacctgcaaatc
ctgatcgacaccctgttcgacgagcgcgaagccggcgacacgctgctcttgttgtcccag
gcctgcgcggcgttgcgcgatcaggcccaggccgccgacctgacgcggcccatcgaactg
gaactggtgcaccagcagctcagcgccgccttgcagcagggcggcggcgcctcgggtttt
ctcaccggtgcggtgaccttctgcaccatggtgccgatgcgcagtctgccgttccgcgtg
gtttgcctgcttggcctggacgatggcgccttcccgcggcgcacgccgccgtcgggcttc
gacctgattggccggcatccgcgccgtggcgaccgtgcgcggcgcctggacgatcgctac
ctgctgctggaaaccctgctttcggcgcgcgaggcgctgtacctgtcctatgtcggccgc
gacccgcgcgacaacgccgtgctgccgccttcggtgctgctcagcgaagtgctggaagcg
gtcgacatgacggcggtgctggccgatggcacgaagccggtcagtcagcagatcctcgtt
gcccatccattgcagcccttctcgccacgcaatttcggcgacgggctctgcgccggtttc
tcttcgccctggtttcgcgccgccgggcgtctggccgagccaccgcagacccagccgcag
ccgttcgccagcctgctcgcagagcccgacgaggcctggctgaccatcgagccgtcgcag
ctgttgcagtgcttccgccatccggcgcgcttcctgctggagcagcgtctcggtttgcgc
ctcgctgacgatcaggaatcgctcgccagtgatgagccgttcgatctggagatgccggcc
tggaacggcctgcggcgcctgtcgctgcaggccatggagcacggctggagcgatgaagac
gaacggcgcatggcctgtgccgccggctggctgcccaccggtgaactgggccaggcgctg
tggggcaagttgcgcggcccggtgcgtgcctttgcgccgcggctattcgaactgcgcccg
gacgcggtgcccgagccgctgccggtggacatcaccctggccggcgtgcgcgtgcatggc
tggctggacggcgtaaccccggccgggctgtttggctggaagctcggccgcctcggcgaa
tgggacctgccaccattctggctgcgccatctgctgctcaacctctccgccacgcccggc
atcgagcgccacagcctgatgctgtcgcccgccggtgactggcaactggggccgctggcg
aatgccgccgagctgctcgaaccctggcttgaggcctatcgctgtgcgattcgtgaaccg
ctgccgttgctgccacgcagcagccatgccttcgccaagggttatcgcaagccgagccgc
ggcagcgaaccgctcgactgcgcacgtaaacgcgcccgtgaagcctggctcggcgccgag
ttcagccccatcgccgccgaagccgaagacccctggaacatgctggccttccgcgaccgc
gatccgctggaccagcgtttcgaaaccttggcgcaggaattgatcggccctgcgctcgat
gctctggctgaagacgaggaggaagcatga |