Stutzerimonas decontaminans: UIB01_01550
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Entry
UIB01_01550 CDS
T03366
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pstu
Stutzerimonas decontaminans
Pathway
pstu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pstu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UIB01_01550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pstu03019
]
UIB01_01550
Enzymes [BR:
pstu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UIB01_01550
Messenger RNA biogenesis [BR:
pstu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UIB01_01550
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AHY41210
UniProt:
A0A023WNE2
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All DBs
Position
complement(327377..329194)
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AA seq
605 aa
AA seq
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MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ELLFPGGHPDREHRYGPKQPRVLVLTPTRELAAQVHDSFKVYARDLPLKSTCIFGGVGMN
PQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRMFRVAASHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKGIERMTKQRIPEGDLMGFDASTIEAEKPEVREPRQPRPQRGEGKPRGERNKPAEKGAE
QKERNRRSQSKARKPSRDGASSEAQAVARPPQLPPDRAPDEFRDDELDNFGNRVDYVSPY
QNKQNRGRRPGAPAQPGGTPRAAGAARTGAAAAGAPAGKGKRSGQGQGARNGQPRNGQPR
RKGEGRRIDEPAVSRQEVAKPREKQPVIIHKESKIDRLPSLDQLEQLPTRPRGEKPALLT
RNREA
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttggccggtgccgtcgaggctgccggt
tacacccagcctactcccgtgcaacagcgggccattcccgccgtgttgcaaggccgcgac
ctgatggttgcagcccagaccggaaccggtaagacaggcggtttcgccctgccggtactc
gaactcctgttcccgggtggtcacccggatcgtgaacaccgctacggcccgaaacagccg
cgcgtgctggtgctaacacctacccgcgagcttgccgctcaggtacacgacagcttcaag
gtctatgcccgtgacctgcccctgaagagcacctgcatcttcggcggcgttggcatgaac
ccgcagatccaggcggttgccaagggtctcgacgtgttggttgcctgccccggccgcctg
ctcgacctggccaaccagaaggccatcgacctgtcgcacgtggaaatcctcgtcctcgac
gaagccgaccgcatgctcgacatgggcttcattcatgacgtcaagaaggtcctggccaag
ctgccggccaagcgccagaacctgctgttctcggcaaccttctccaaggacatcaccgac
ctcgccggcaagctactgcacaaccccgagcgcatcgaggtgacgccaccgaacaccacc
gtcgagcgtatcgagcagcgcatgttccgcgtggccgccagccacaagcgcgccctgctc
gcgcacctgatcactcagggtgcctgggaacaggtgctggtctttacccgtaccaagcac
ggcgccaaccgcctggccgagtacctggaaaagcacggcttgccggctgctgcgattcac
ggcaacaagagccagaatgcgcggaccaaggccctggctgatttcaaggccaaccaggta
cgcatcctggtcgccaccgatatcgctgcacgcggcctggatatcgatcagctgccccat
gtggtcaacttcgagctgcccaacgtcgaggaagattacgtgcaccgcatcggccgtacc
ggtcgtgccggacgcagcggtgaagccatttcgctggttgctcccgacgaggaaaagcta
ctcaagggcatcgagcgcatgaccaagcagcgcatccccgaaggcgatctgatgggcttc
gacgccagcaccatcgaggcagaaaagccagaggtgcgcgaaccgcgccaaccgcgtccg
caacgcggcgaaggcaagccacgcggcgagcgtaacaagccggccgagaaaggcgccgag
cagaaggagcgtaaccgtcgcagccaaagcaaggcccgcaagccttcccgtgacggcgcc
agcagcgaagcgcaggccgtcgcccggccgccgcagctgcctccggatcgcgcgcctgac
gagttccgtgatgatgagctagacaatttcggcaatcgcgtcgattacgtcagcccctat
cagaacaagcagaatcgcggtcgccggcccggcgctccggcccagccgggcggcactccg
cgtgcagccggagcggcacgcacgggtgcagctgctgcgggtgcgccggctggcaagggc
aagcgttccggccaaggccagggcgcacgcaatggtcagccgcgcaacggccaaccacgg
cgcaaaggcgaaggccgtcgcatcgacgagcctgccgtgtcgcgccaggaagtcgccaag
ccgcgggagaagcagccggtgatcattcacaaggaatcgaagatcgatcggctgcccagc
ctggatcagctcgagcagctgccaacgcgaccgcgcggcgagaaaccggccttgctgacg
cgtaatcgcgaagcttga
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