Stutzerimonas decontaminans: UIB01_07240
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Entry
UIB01_07240 CDS
T03366
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pstu
Stutzerimonas decontaminans
Pathway
pstu03410
Base excision repair
pstu03430
Mismatch repair
pstu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pstu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
UIB01_07240
03430 Mismatch repair
UIB01_07240
03440 Homologous recombination
UIB01_07240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pstu03400
]
UIB01_07240
DNA repair and recombination proteins [BR:
pstu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
UIB01_07240
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
UIB01_07240
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UIB01_07240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AHY42281
UniProt:
A0A023WQK3
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All DBs
Position
1519061..1520776
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AA seq
571 aa
AA seq
DB search
MRIEPRPLPEQLPDLGELPPLLQRLYAARGVTCAEELDKGLARLIPYKQLKGIDAAVELL
VEALEKRQRILFVGDFDADGATASTVGVLGLRQLGAAHVDYLVPNRFEYGYGLTPEIVAV
ALQREPDLLVTVDNGISSVDGVAAAKAAGLKVLVTDHHLPGHELPEADAIVNPNQPGCAF
PSKCIAGVGVIFYVLLALRARLRELDWFVRQGWVEPNLAELLDLVALGSVADVVPLDANN
RILVHQGLARIRAGRARAGLRAILEVAGRDHRRITSTDLGFILGPRLNAAGRLDDMSLGI
ECLLCEDEALARDMAVQLDELNKDRKSIEQGMQREALAQLKELPLEDLPFGLCLFEADWH
QGVIGILASRLKERYHRPTIAFADAGDGLLKGSARSVPGFHIRDALDAVAAKHPGLISKF
GGHAMAAGLSLPQANFGAFAAAFDAEVRRQLCEDDLTGRLLTDGQLSVEEFHLELARALR
NAGPWGQHFPEPMFHGVFQLVQQRIVGERHLKLVLKSECGSLTLDGIAFNVAREIWPNPT
VRWAEVAYKLDVNEYRGQESVQLMVAHIAPR
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcgaaccccgccccctgcccgagcagctacccgacctcggcgagctgccgccg
ctgctgcagcgcctctacgcggcccgtggcgtgacctgcgcagaggagctggacaagggg
ctggcgcggttgattccttataagcagctcaagggcatcgatgcggcggtggagctgctg
gtcgaggcgctggaaaagcgccagcgcatcctgttcgtcggcgatttcgatgccgatggc
gccacggccagtaccgtcggcgtgctcggactgcgccagctgggtgcggcgcatgtcgat
tacctggtgcccaatcgcttcgaatatggctatggcctgaccccggaaatcgttgcggtc
gccttgcagcgcgagcccgatctgctggtgacggtggacaacggcatctccagtgtcgac
ggcgtggcggcggccaaggccgcagggctcaaggtgctggtcacggaccatcacctgccg
ggtcacgaactgccggaggcggatgccatcgtcaatcccaaccagcctgggtgtgccttc
cccagcaagtgcatcgccggggtcggggtcatcttctatgtgctgctggcgttgcgcgcg
cgtctgcgtgagctggactggttcgtccgtcagggctgggtcgagccgaacctcgccgag
ctgctcgacctggtggcgctgggcagcgtcgccgacgtggtgccgctggatgccaacaac
cgcattctggtccatcagggtctggcgcggatccgcgccgggcgggcaagggcgggcctg
cgggcgattctcgaagtggccgggcgcgatcatcgacgcatcacttccaccgatctgggc
ttcattctcggaccgcgactcaacgcggccgggcggctggacgacatgtcgctgggcatc
gaatgcctgctctgcgaggacgaggcgctggcgcgcgatatggcggtccagctcgatgag
ctgaacaaggaccgcaagagcatcgagcagggcatgcagcgcgaggcgctggcgcagctc
aaggagctgccgctggaagacctgccgttcggcctgtgcctgttcgaggcggactggcac
cagggcgtgatcggcatcctcgcctcgcgcctgaaggagcgctaccaccgcccgaccatt
gccttcgcggatgctggcgatgggctgctcaagggctcggcgcgctcggtgccaggcttt
catattcgcgatgcgctggatgcggttgccgccaagcatcccggcctgatcagcaagttc
ggcgggcacgccatggcggccgggctttcgctgccgcaagccaacttcggcgccttcgcc
gccgccttcgatgccgaggtgcggcgccagctgtgcgaggacgatctcaccggccggttg
ctcaccgacggccagctcagcgtcgaggagtttcacctggagctggcccgcgcactacgc
aacgccgggccctggggccagcattttcccgagccgatgttccatggggtgttccagctg
gtgcagcagcgtatcgtcggcgagcgccatttgaagcttgtgctgaagagcgaatgtggt
tcgctgaccctcgatggcatcgccttcaacgtcgcccgtgagatctggccgaacccgacg
gtgcgctgggcggaagtggcctacaagctggacgtcaacgagtatcgcggccaggaaagc
gtgcaactgatggtggcgcatatcgccccgcgctga
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