Stutzerimonas decontaminans: UIB01_07755
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Entry
UIB01_07755 CDS
T03366
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pstu
Stutzerimonas decontaminans
Pathway
pstu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pstu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UIB01_07755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pstu03400
]
UIB01_07755
Enzymes [BR:
pstu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UIB01_07755
DNA repair and recombination proteins [BR:
pstu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
UIB01_07755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHY42382
UniProt:
A0A023WQ89
LinkDB
All DBs
Position
complement(1629929..1633375)
Genome browser
AA seq
1148 aa
AA seq
DB search
MSVLRLPPLPAASGKQHWGNLPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAF
FAPGLPVLHFPDWETLPYDIFSPHQDIVSQRISALYQLPELSHGVLVVPITTALHRLAPK
RFLLGSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPY
RIDLFDDEIETLRTFDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFR
RCPIYQDLSTGITPAGIEYYLPLFYEETATLFDYLPEDSQVFSLPGIEQAAEQFWSDVRN
RYEERRVDPERPLLPPAELFMPVEDCFARLKLWPRVVASQQDVEPGIGRERFNAHALPEL
AIESKANEPLGKLRQFLESYPGRVLFTAESAGRREVLLELLARLKLRPQEVDGWPGFLAS
DERLAITIAPLDEGLQLDDVALVAESPLFGQRVMQRRRREKGRDAGENVIKNLTELREGS
PVVHIDHGVGRYQGLVTLEIEGQAQEFLLLQYAEDAKLYVPVASLHLIARYTGSDDALAP
LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQVDYETFAAGFPFEE
TPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVGVLVPTTLL
AQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQNAIAELAEGKIDILIGTHKLLQDDVKFS
NLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIATPPA
RRLSVRTFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALVPEARVAIG
HGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQLRG
RVGRSHHQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLGE
GQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLPALIPEDYLPDVH
ARLILYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQSEKLGIIKIDAG
PQGGRIEFSADTSVDPMVLIKLIQSQPKRYKFEGATLFKFQVPMERPEERFNTLEALLER
LAPSELGS
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtcttgcgccttccacccctgcctgccgccagcggcaagcaacactggggcaat
cttccaggagccgcgctgagcctggcgattgccgaagcagccagcaacgccaaacgcttc
acgttgctcctcactgccgacagccagagtgccgagcgcctgcaggaagagctcgctttc
ttcgcaccgggactgccggtgctgcatttccccgattgggaaacgctgccctacgacata
ttttcgccacatcaggacatcgtctcccagcgcatttccgcgctctaccaactgccggaa
ctgagccacggcgtgctggtagtgccgatcaccaccgccctacacaggctggcgccgaag
cgcttcctgctgggttcgagtctggtgctggacgtcgggcagaagctcgacgtcgagcag
atgcgtctgcgtctggaagcggccggctatcgctgcgtggacacggtctacgagcatggc
gaattcgccgtacgcggtgcgttgatcgatttattccccatgggcagccccctgccctac
cgcatcgacctgttcgatgacgagatcgaaacactgcgcaccttcgatccggaaaaccag
cgttcgatcgacaaggtggagtcgatccgcctgttgccggcacgcgagttccccctgaag
aaagaagcggtcactggcttccgcgcgcggttccgcgagcgtttcgacgtcgatttccgc
cgctgcccgatctatcaggatctctccaccggcatcaccccagcaggtatcgagtactac
ctgccactgttctatgaagaaaccgcgacgctgttcgattacctgcccgaagacagccag
gtgttctcgctgcccggcatcgaacaggccgccgagcagttctggagtgatgtacgcaat
cgctacgaggaacgtcgcgtcgaccccgagcgcccgctgttgccgcctgccgagctgttc
atgccggtggaggactgcttcgctcgcctgaaactctggccacgggtggtcgccagccag
caggacgtcgagccaggtatcggccgtgaacgcttcaatgcccacgcgctgccagaattg
gccatcgagtccaaggccaatgagccgctgggcaagctgcggcaattcctcgaaagctat
ccgggacgcgtgctgttcactgccgaatccgctggtcgccgcgaggtgttgctggagctg
ctggcacggctgaagttgcgtcctcaggaagtcgacggctggccgggctttctcgccagc
gacgaacgtctggccatcaccatcgccccgctcgacgaaggcctgcaactggacgacgtg
gcactggtcgcggaaagccccctgttcggccagcgcgtcatgcaacgccgacgcagggag
aagggtcgcgacgctggcgaaaacgttatcaagaacctcaccgagctgcgcgaaggctcg
ccggtggtgcacatcgatcacggtgtcggtcgctaccagggattggtcaccctcgaaatc
gaaggccaggcgcaggaattcctgctgctgcagtacgccgaggacgccaagctctacgtg
ccggtcgccagcctgcacctgatcgcccgctatacaggcagcgacgacgcgctcgcgcca
ctgcaccggctcggttcggaaacctggcagaaggccaagcgcaaggccgccgagcaggtc
cgcgacgttgccgccgagctgctcgacatctacgcccgccgcgcggcacgcgagggttat
gcattcaaagacccgcaggtcgactacgaaacgttcgccgcaggctttccgttcgaggaa
acgcccgatcagcaggccgccatcgacgcggtgcgcgaggacctgttgtcggccaagccg
atggaccgcctggtctgcggcgatgtcggcttcggcaagaccgaagtcgccatgcgcgcc
gcgttcatcgccgtccatggcggccggcaggttggcgtactggtgccgaccaccctgctc
gcccagcagcattacaacagcttccgcgaccgcttcgccgactggccggtgcgggtcgag
gtgatgagccgcttcaaatccgccaaggaggtgcagaacgctatcgccgagctcgccgag
ggcaagatcgacatcctcatcggcacccacaagctgctgcaggacgacgtcaagttcagc
aacctgggcctggtcatcatcgacgaggaacaccgcttcggcgtacgccagaaggaacaa
ctcaaggcgctgcgcagcgaggtggacatcctcaccctgaccgccacgccgattccgcgc
acgctgaacatgtccatcgccggcatgcgcgacctgtcgatcatcgccacgccgccggcg
cgccgcctgtcggtgcgcaccttcgtcatggaacagcagaacaccgtgatcaaggaggcg
ctgctgcgcgagctgttgcgcggcggccaggtctattacctgcacaacgatgtgaagacc
atcgagaaatgcgccgccgatctgcaggcactggtgccggaggcacgcgtcgcgatcggc
cacgggcagatgcgcgagcgtgacctcgaacaggtcatgagcgacttctaccacaagcgc
ttcaacgtgctggtggcctcgaccattatcgaaaccggcatcgacgtgccgagcgccaac
accatcatcatcgagcgcgccgacaagttcggcctggcgcagctgcaccagctgcgtggc
cgggtcgggcgcagtcaccaccaggcctatgcctatctgctcacccctactcgcaaggcc
atgaccgacgacgcgcagaagcgcctggaggccatcgccaatgcccaggacctcggtgca
ggcttcgtcctggccacccacgacctggaaatccgcggcgccggcgagctgctcggcgag
ggccagagcggacagatccaggccgtcggcttcactctttatatggaaatgctcgagcgc
gcggtcaaagccatccgcaagggcgagcagccgaacctggagcagccgctcggcggcggc
ccggagatcaacctgcgcctgccggcactgattccggaggactatctgccggacgtgcac
gcccgtctgatcctctacaagcgtatcgccaatgccgccgacgaggatggcttgaaggaa
ctgcaggtggagatgatcgaccgcttcggcctgctgcccgagccaaccaagaatctggtg
cgcctgacgctgctcaagctgcagtcggaaaagctcggcatcatcaagatcgacgccggc
ccgcagggtgggcgcatcgagttctcggcagatacctcggtcgatccgatggtgctgatc
aagctgatccagagtcagcccaagcgctacaagttcgagggcgccacgctgttcaaattc
caggtgccgatggaacgcccggaagagcgtttcaataccctggaagcgctcctcgaacga
ctcgcgcccagcgaactgggatcctag
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integrated database retrieval system
