Stutzerimonas decontaminans: UIB01_07885
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Entry
UIB01_07885 CDS
T03366
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pstu
Stutzerimonas decontaminans
Pathway
pstu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pstu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UIB01_07885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pstu03019
]
UIB01_07885
03009 Ribosome biogenesis [BR:
pstu03009
]
UIB01_07885
Enzymes [BR:
pstu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
UIB01_07885
Messenger RNA biogenesis [BR:
pstu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UIB01_07885
Ribosome biogenesis [BR:
pstu03009
]
Prokaryotic type
rRNA processing factors
UIB01_07885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AHY42408
UniProt:
A0A023WQI7
LinkDB
All DBs
Position
complement(1656912..1660067)
Genome browser
AA seq
1051 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDFGAE
RHGFLPLKEISREYFSKSPEGRVNIKDVLREGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLDIPADMGLIVRTAGLGRSSEELQCDLD
YLLQLWTAVKDASKDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQ
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINS
ARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREA
LEADRARIQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRL
IEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQ
RLRDDSPEILAGQASYEMSQTEAEEAQPVSSTRTLVRQEAAVKTAPQRTAPAAAAAPAEV
PVAAPAQEPSLFKGLIKSLVGLFAGETKEPQATAEVEKKPASPRPQRNDERRSGRQQNRR
RDSRGGRDEERKPREERQPREERQAREERQPREERQPREERQPRPPREERKPREQVEATE
AQPRRERAPREERKPREERKRELRAPIDEAPVVAEEEQVERQPRAPREERKPRMEQQTAA
AAADELLQQADDTNEVEDAQDANEGTEGNDGERPRRRSRGQRRRSNRRERQRDANGNEID
EVDESNAPVKTEEIAVAATAAALAANTADTEAAPQAKLADDAVIQTSTEGVATIVEQTPA
AQSAPEPMAAEKPAVVATAIEVPSQPTEAAPSASEAAPAIQADLTPQAAPEPVVEKTESA
PVVAPALTPSGRAPNDPREVRRRQREAERLAKEAAEAEARAATEQPLASPEIVVSEPAVD
TQAEAVAQPKATEFQPEQVEQPIPAAVQPAIEEQSVSLTAEPAQQAQAPEAEATEQKPEA
PVTEQAPQRAPGESVETAEGDEPDNRDKPQG
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgctaattaacgcaactcagcctgaagagttgcgtgtcgcactggtcgacggccaacgt
ctgttcgatctggacatcgaatcaggtgcccgcgagcagaagaaagccaacatctacaaa
ggcaaaatcacccgcgtagaacccagccttgaagccgccttcgtcgatttcggcgccgag
cgtcacggcttcctccccctcaaggaaatttcccgcgaatacttcagcaaatcacctgaa
ggccgcgtgaacatcaaagacgtcctgcgcgaaggccaggaagtcatcgtgcaggttgaa
aaggaagaacgcggcaacaagggcgccgcgctcactaccttcatcagcctcgccggccgc
tatctggtcctgatgccgaacaacccgcgagcaggcggcatctcccgccgcatcgaaggt
gaagaacgcaacgaattgcgcgaagctctgaatggcctcgacatccctgccgacatgggc
ctgatcgtccgcacggccggcttgggccgctccagcgaagagctgcagtgcgacctggat
tacctgctgcaactctggactgcagtcaaggatgcctccaaggaccgcgccgcaccgttc
ctgatttatcaggagtccaacgtcatcattcgcgcgattcgcgattatctgcgccaggac
atcggcgaagtgctgatcgacagcgtcgaggctcaggacgaagcactgagcttcatccag
caggtgatgccgcagtacgccagcaagatcaagctgtatgaagactccgttccgctgttc
aaccgcttccagatcgaaagccagatcgagacagccttccagcgcgaagtaaagctacct
tccggcggctcgatcgtgatcgatccgaccgaagcactggtatccattgacatcaactcg
gctcgcgccaccaaaggcggcgacatcgaagaaaccgcactgcagaccaacctggaggct
gcggaagagatcgcacgtcaactgcggctgcgcgacatcggtggcctgatcgtcatcgac
ttcatcgacatgacgccggccaagaaccagcgcgccgtcgaagaaaaagtgcgcgaagcg
ctggaagccgaccgcgcacgcattcaggttggccgcatctcccgcttcgggctgctggaa
atgtcccgtcagcgcctgcgcccctccctcggcgagaccagcggcattgtctgccctcgc
tgtaatggccagggcatcatccgcgatgtggaatccctatcgctggcaattctgcgcctg
atcgaagaagaagccctgaaggaccgtaccgcagaagtgcgcgctcgcgtgccattccag
gtcgccgcattcctgcttaacgagaagcgcaacgcgatcaccaagatcgagctacgcact
cgcgcccgcatcttcatcctgccggacgaccatctggaaacgccgcatttcgaagtacag
cgcctgcgcgacgacagcccggagatcctggccggccaggcaagctacgagatgagccag
accgaagccgaggaagctcagccggtcagttccacccgcaccctggtgcgccaggaagcg
gcggtcaagaccgccccgcagcgcaccgcaccggcagccgccgcagcgccagcagaagta
cccgttgccgcgccggcacaggaaccaagtctgttcaagggcctgatcaagtccctggtc
ggcctgttcgcaggcgagacgaaagaaccgcaagccactgccgaagtcgagaagaagccc
gcttcgccgcgcccgcagcgcaatgacgagcgccgcagcggtcgccagcagaaccgccgt
cgtgattcacgtggaggccgtgacgaggagcgcaagccgcgcgaagagcgtcagccgcgt
gaggagcgtcaagcccgtgaggaacgccagccacgtgaggagcgccagccacgcgaagag
cgccagccacgcccgccgcgcgaggagcgcaaaccacgcgagcaagttgaagccaccgag
gcccagccgcgccgcgagcgagccccacgcgaggagcgcaagccccgtgaggagcgcaag
cgcgaactgcgtgcgccgatcgacgaagcaccggtagttgcggaggaagagcaggttgag
cggcagccccgtgcgccgcgcgaagagcgcaagccgcgcatggaacagcagactgcggca
gccgctgccgacgagttgctgcagcaagcggacgacacgaacgaagtcgaagatgcccag
gacgccaacgagggtaccgaaggcaatgatggtgagcgtccacgccgccgctctcgcggt
cagcgtcgtcgtagcaaccgccgcgagcgtcagcgcgatgccaacggcaatgagatcgac
gaggtcgacgagagcaacgctccggtgaagaccgaggagattgccgtcgctgcaaccgca
gccgccctggccgcaaacacggccgacaccgaagctgctccccaggcgaagctagccgat
gatgccgtgatccagacgagcaccgaaggggttgcaaccatcgtcgagcagacgccggcc
gcgcagagcgctccggaacctatggctgccgagaagccggcagtggtcgcgactgcaatc
gaggttccgtcacagcctaccgaagccgcacctagcgcaagcgaggcagcgccagccatc
caggccgatttgactccgcaagcagctcccgagccggttgtcgagaaaaccgaatcagca
ccggttgtcgcacccgcactgacgcctagcggtcgggcacccaacgatccgcgcgaagtc
cgtcgccgccaacgtgaagctgagcgcctggccaaggaagcagctgaagccgaagccagg
gccgcaaccgagcagccactggccagcccagagatcgttgtcagcgagccggccgtagat
acccaggcggaagctgttgcacagccgaaggccaccgagttccagccggagcaagtggaa
cagcccatacctgccgcggttcagcccgctatcgaagagcaatcggtcagtctgactgcc
gagcccgctcagcaggcgcaagctccggaagcggaagcgaccgagcaaaaaccagaagct
ccggtaaccgagcaggcacctcaacgtgcacccggggagtcggtagagactgccgaaggc
gacgagccagataatcgtgataagccgcaaggctaa
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