Stutzerimonas decontaminans: UIB01_08565
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Entry
UIB01_08565 CDS
T03366
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pstu
Stutzerimonas decontaminans
Pathway
pstu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pstu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UIB01_08565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pstu03019
]
UIB01_08565
03009 Ribosome biogenesis [BR:
pstu03009
]
UIB01_08565
Enzymes [BR:
pstu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UIB01_08565
Messenger RNA biogenesis [BR:
pstu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UIB01_08565
Ribosome biogenesis [BR:
pstu03009
]
Prokaryotic type
rRNA helicases
UIB01_08565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHY42537
UniProt:
A0A023WQR0
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All DBs
Position
1785355..1787025
Genome browser
AA seq
556 aa
AA seq
DB search
MTQEIGGFAALGIHSAVLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAAF
ALPILSKIDPARKEVQALILAPTRELALQVATAFETYSKQMPGLTVVAVYGGAPMGPQLK
AIRQGAQVIVATPGRLVDHLSRNSGLLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPES
RQSVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLL
EVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTNQKVAEARLPNAQQVLDARIKKLTNSLAPLVADAEATHGELLDKLVADIGCSPRAL
AAALLRKATNGQALTLAEVEKEQPLVPTSSPRERSERSDRPERSGDRERRAPIPLAEGRA
RCRTPLGARDGIAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDRLLGKLKD
TRVGGKQLKLRRYRED
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaaatcggcggctttgccgcactcggtattcactccgctgttctggctgcc
atcagcgcggtcggctacgaagaaccatcccctattcagtcccaggcgatcccggtgatc
cttggcggtcacgacatgatcggccaggcgcagaccggtaccggcaagaccgcagccttc
gcgctgccgatcctgtccaagatcgatccggctcgcaaggaagtgcaggcgctgatcctc
gcgccgacccgcgagctggccctgcaggtcgccactgcattcgaaacctattccaagcag
atgcccggcctgaccgttgtcgcagtctacggtggtgcgccgatgggcccgcagctcaag
gccatccgccagggcgcgcaggtcatcgtcgcgaccccgggtcgcctggtcgaccacctg
agccgcaacagtggtctgctgtcgaccattcgcttcctggtcctcgacgaagccgatgaa
atgctcaagctgggcttcatggatgacctcgaagtgatcttcgaagccatgccggaaagt
cgccagagcgtactgttctccgcgacgctgccgcactccatccgcgccatcgccgagaag
cacctgcgcgaaccgcagcacatcaagatcgccgccaagacccagactgtcgctcgtatc
gagcaggcgcacctgatggtccatgccgaccagaagatccaggccgtgctgcgcctgttg
gaagtcgaggatttcgacgccctgatcgccttcgttcgcaccaagcaagccaccctggat
ctggccgccgcgctggaagccaagggctacaaggctgctgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgtcatcgaatcgctcaaggacggccgccttgacatcgttgtc
gccaccgacgtcgccgctcgcggtctcgacgtggcgcgcatcacccacgtattcaacgtg
gacatgccctacgatccggaatcctacgtgcaccgtatcggccgtaccggtcgtgccggt
cgcgaaggccgtgcactgctgctggtcaccccgcgtgagcgtcgcatgttgcaggtcatc
gagcgcgtgaccaatcagaaggtcgctgaagcccgtctgccgaatgcgcagcaggtgctg
gacgcgcgcatcaagaaactcaccaacagcctcgcgccgctggtggctgatgccgaagcg
acccatggcgagttgctcgacaagctggtcgccgacatcggctgcagcccgcgcgccctg
gccgccgcactgctgcgcaaggccaccaatggtcaggcgctgaccctggccgaagtcgaa
aaagagcagccgctggttccgaccagcagcccgcgtgagcgcagcgagcgttcggatcgt
cctgagcgtagcggtgatcgtgagcgtcgcgctccgatcccactggccgaaggccgcgcc
cgctgccgtaccccgctgggtgcgcgtgacggcatcgccgctcgcaacctgctcggtgcg
atccttaacgaaggcggtcttgcccgcgaagccatcggccgcatccaggtgcgcgacagc
ttcagcctggtcgaactgcctgaagacggcctcgaccgcctgctcggcaagctcaaagac
acccgtgttggtggcaaacagctcaagctgcgccgctatcgcgaagattga
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