Stutzerimonas decontaminans: UIB01_08870
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Entry
UIB01_08870 CDS
T03366
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pstu
Stutzerimonas decontaminans
Pathway
pstu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pstu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UIB01_08870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pstu03019
]
UIB01_08870
03400 DNA repair and recombination proteins [BR:
pstu03400
]
UIB01_08870
Enzymes [BR:
pstu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UIB01_08870
Messenger RNA biogenesis [BR:
pstu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UIB01_08870
DNA repair and recombination proteins [BR:
pstu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
UIB01_08870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HTH_40
Sigma70_r4_2
HTH_23
ResIII
HTH_29
GerE
HTH_7
HTH_20
PAX
Motif
Other DBs
NCBI-ProteinID:
AHY42590
UniProt:
A0A023WSE5
LinkDB
All DBs
Position
1852753..1854876
Genome browser
AA seq
707 aa
AA seq
DB search
MLDQAQRILKDVFGYDAFRGNQGAIIERVGSGGDALVLMPTGGGKSLCYQVPALLREGLA
VVVSPLIALMDDQVATLDELGVSAVALNSTLSADEHRDIAERIRRNEIKMLYLAPERLVQ
PRMLAFLQRLDVALFAIDEAHCVSQWGHDFRPEYMQLGQLAELFPGVPRIALTATADMRT
REEIVQRLHLENAERFLSSFDRPNIFYRIVPKEQPRKQLLGFLAERRGDAGIVYCMSRKK
VDDFAAFLSEQGFPALPYHAGLPNELRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVIFLKQMLNNSEGDERHKRVEQHK
LDAMLALCEETRCRRQALLAYFDEELPNPCGHCDNCVDGVQTWDATEPARQALSAIYRSG
QRYGVGHLVDILLGRDNEKVRGLGHQHLSVFGMGKTLAEAEWRSLFRQLVARGLVDVDLD
GFGGLRLSDSCRPLLRGEVSLELRRDLSSKAPKPAASAASQLVRGEERETWEALRTLRRK
LAEEHGVPPYVIFPDATLLEMLRSQPASLSDMAMISGVGARKLERYGQAFLEVLQGVATV
AKSPSDLRHELITLARAGMTPAQIARQLACSEKNVYAMLAEAIGLQQLSLEQALDLPEDL
LGEIQEAFLDGEGELPAVSAVAEQFAGRVSEQVLYCVRAALQVEFEL
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaccaggcacagcgcatcctcaaagacgttttcggctacgacgcgtttcgtggc
aaccagggcgcgatcatcgagcgtgtcggcagcggcggtgacgcattggtcctgatgcca
accggcggcggcaagtcgttgtgctatcaggtgccggcgctgctacgcgaaggcttggcg
gtggtggtgtcacctttgatcgcgttgatggatgatcaggtggccaccctcgatgagctc
ggggtgtcggccgtcgcgctgaactcgacgctgagcgccgatgagcatcgcgatatcgcc
gagcgcatccggcgtaatgagatcaagatgctctatctcgcaccggagcggctggtccag
ccgcgcatgctggcttttctgcagcggctggacgtcgccttgtttgccatcgacgaggcg
cattgcgtatcccagtggggacatgacttccgccccgagtacatgcagttgggtcagctc
gctgagctgtttccgggcgtcccacgtatcgcgttgactgccacggcggacatgcgcacc
cgcgaggagatcgtccagcgcctgcatctggagaacgccgagcggtttctctccagtttc
gaccggccgaacatcttctatcgcatcgttcccaaggagcagccacgcaagcagttgctc
ggttttcttgccgagcgccgcggggacgctggcatcgtctactgcatgtcgcgcaagaag
gtcgacgattttgccgccttcctgagcgagcagggcttcccggcgctgccctatcacgca
ggtctacccaacgagctgcgcgcctatcaccagaagcgtttcctcaatgaggaggggctg
atcatggtagcgaccatcgccttcggcatggggatcgacaagcccaacgtgcgcttcgtt
gcccacctcgatctgcccaagtccctggaagcgtattaccaggaaaccgggcgggcaggg
cgtgacggcctgcctgcggatgcctggatggcctacggcctgcaggacgtgatcttcctt
aagcagatgctcaacaactccgagggcgatgagcggcacaagcgggtcgagcagcacaag
ctcgacgccatgctggctctgtgcgaggaaactcgctgccggcgccaggcgcttttggcg
tacttcgacgaggagttgcccaacccgtgcggccattgcgataactgcgtcgacggcgtg
cagacctgggacgccaccgagcccgcgcggcaggcgctttcggccatctatcgcagcggt
cagcgttacggcgtcggccatctggtggacatcctgctgggtcgcgacaacgagaaggtg
cgcgggctcggtcatcagcacctctctgtgttcggcatgggcaaaacgcttgccgaagcg
gaatggcgttcgttgttccgtcagctggtcgcgcgcggactggtcgacgtggatttagac
ggttttggcggattgcgtctgagcgacagttgccgtccgcttttgcgcggtgaggtcagt
ctggagctgcgccgggacctgtccagcaaagcgccaaaacctgccgccagtgcggccagc
caactggtgcgtggcgaagaacgcgagacctgggaagccctgcgcacgttgcgtcgcaag
ctggccgaggaacacggcgtaccgccctatgtgatctttccggacgccaccctgctagaa
atgttgcgtagccagcccgcatcgctttccgacatggcgatgatcagcggcgtcggcgcg
cgcaagctggagcgttacggccaggcattcctggaagtgctgcaaggtgtcgcgacggta
gccaagtcgcctagcgatctacgccacgagctgattaccctggcgcgggcaggcatgacg
ccagcgcagatcgctcgtcagctcgcttgcagtgagaaaaacgtctacgcaatgctcgcc
gaggctatcgggctacagcagttgagcctcgaacaggcgctggacctgcccgaagacctg
ctaggagagatacaggaggctttcctcgacggtgagggtgagctgccggcggtcagtgcg
gtagccgagcagttcgccgggagggtgtcggagcaggtgctttattgcgtgcgcgccgcg
ctgcaggtcgagttcgaattgtaa
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