Stutzerimonas decontaminans: UIB01_18270
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Entry
UIB01_18270 CDS
T03366
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pstu
Stutzerimonas decontaminans
Pathway
pstu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pstu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UIB01_18270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pstu03021
]
UIB01_18270
03400 DNA repair and recombination proteins [BR:
pstu03400
]
UIB01_18270
Enzymes [BR:
pstu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UIB01_18270
Transcription machinery [BR:
pstu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UIB01_18270
DNA repair and recombination proteins [BR:
pstu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UIB01_18270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3150
ApbA_C
PPDFL
Motif
Other DBs
NCBI-ProteinID:
AHY44312
UniProt:
A0A023WVR8
LinkDB
All DBs
Position
complement(3851329..3855528)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQIEEFDAIKIALASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLIQIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFHGSGNLPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGMATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EASLHARVKVRINEVIKDRDGTITKNTRIVDTTVGRALLFQIVPAGLAFDVVNQPMKKKA
ISKLINLCYRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRDGKEAEQDSFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEQGLFMTPHIEGGDVVEPLGERVL
GRVIARDVLKPGTDDVLVPAGTLVDEQWVDFIELNSIDEVVVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAVDNVMVKNGGTIRL
HNLKHVERADGALVAVSRSGELAVADDFGRERERYKLPYGAVISVKEGDKVDAGAVVAKW
DPHTHPIVTEMKGVVTFVGMEENITIKRQTDELTGLTNIEVMDPKDRPASGKDIRPAIKM
VDVNGKELLLPGTDVPAQYFLPANALVGVADGAEINVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNKGEVISDGPSNPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTQVLEENERLSEEDKFVSKYVRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLQYHSERKRKREADKPVR
VSADEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctgaatctgctgaaaaaccagggtcaaatcgaagagttcgatgccatt
aagattgccctggcttcgcccgaaatgatccgttcctggtcattcggcgaagtaaagaag
ccggaaaccatcaactaccgtacgttcaagccggagcgtgacggcctgttctgcgccaag
atctttggcccggttaaggactatgagtgcctgtgcggtaagtacaagcgcctcaagcac
cgcggtgttatttgtgagaagtgcggtgttgaagtcgcgttggccaaggtgcgtcgcgaa
cgcatggcgcatatcgaactcgcatcgccggtcgcccatatctggttcctgaagtcgctg
ccgtcccgtatcggtctgctgctggatatgaccctgcgtgacatcgagcgcgtgctctac
tttgagagctacgttgtcatcgatccgggcatgaccaccctggaaaagggtcagctgctg
aatgacgagcagtacttcgaggcgctggaagagttcggcgacgacttcgatgcccgcatg
ggtgccgaggctgtgcgcgagctgctgatccagatcgacctggagcacgagatcggtcgc
ctgcgcgaagagatcccgcagaccaactcggaaaccaagatcaaaaagctctccaagcgg
ctgaagctgatggaagctttccatggctcgggcaacctgccggagtggatgattctgacc
gtgctaccagtgctgccgccggatctgcgtccgctggtcccgctggatggcggtcgcttc
gcgacttcggatctgaacgatctgtatcgccgcgttatcaaccgtaacaaccgtctgaag
cgcctgctcgacctgtcggcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaggcggtcgacgcgctgctggacaacggccgtcgcggccgtgccatcaccggttcgaac
aagcgccccttgaagtccctggctgacatgatcaagggcaagcagggtcgtttccgtcag
aacctgctcggcaagcgtgtggactactccggtcgttccgtgatcaccgtgggcccgacc
ctgcgtctgcatcagtgcggtctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagcttgaaatgcgtggcatggccaccaccatcaaggcggccaagaagatg
gtcgagcgcgaactgccagaggtctgggacgtgctcgccgaagtcatccgcgaacatccc
gtgctgctcaaccgcgcgccaaccctgcaccgtctgggtatccaggcgttcgagccggtg
ttgatcgaaggcaaggcgatccagctgcatccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgtgcacgtgccgcttacgctggaagctcagctggaagcg
cgcgcgctgatgatgtcgaccaacaacatcctctcgccagcaaacggtgagccgatcatc
gttccttcgcaggacgtcgtcttgggtctgtactacatgacccgcgaagcgatcaacgcc
aagggcgaaggtcgtgtgttcgccgatctgcaggaagtcgatcgcgttttccgtgcgggt
gaggcatcgctgcatgcgcgggtaaaagtgcgtatcaacgaagtgatcaaggatcgcgac
ggcaccattaccaagaacactcgcatcgtcgacaccaccgttggccgcgcgctgctgttc
cagatcgtgccggccggcctggcgttcgatgtggtcaaccagccgatgaagaagaaggcg
atctccaagctgatcaacctgtgctaccgcaccgttggtctgaaggacaccgtcatcttc
gccgaccagttgatgtacaccggtttcgcttactcgaccatctccggtgtttccatcggc
gtgaacgactttgtgattccggatgagaaggcacgcatcatcgatgcggctaccgaagaa
gttaaagagatcgagagccagtatgcgtccggcctggtaacccagggcgagaagtacaac
aaggtgatcgacctttggtccaaggccaacgacgaagtttccaaagcgatgatggccaac
ctctccaaggagaaggtcattgatcgagatggcaaggaagccgagcaggactccttcaac
tcgatgtacatgatggctgactcgggcgcgcggggttccgctgcccagattcgccagctg
gcgggtatgcgtggcctgatggccaagccggatggctccatcatcgagacgccgattacc
gccaacttccgtgaaggcctgaacgtactgcagtacttcatctccactcacggtgctcgt
aaaggtctggcggataccgcgctgaaaaccgcgaactccggttacctgactcgtcgtctg
gtcgatgtcgcgcaggatctggtggtcaccgaggtcgattgcggcaccgagcagggtctg
ttcatgaccccgcacatcgagggtggcgacgtggtcgagccgctcggtgagcgtgttctc
ggtcgtgtgatcgcgcgcgatgtgctcaagccgggcaccgatgatgtactggttccagcc
ggtacgctggttgatgagcagtgggtcgacttcatcgagctgaacagcatcgacgaagtg
gtcgtgcgctcgccgatttcctgtgaaacccgctacggtatctgcgccaagtgctacggt
cgcgatctggctcgtgggcatcaggtgaacattggtgaggcggtaggcgtgatcgccgcg
cagtccatcggtgagccgggtacccagctgaccatgcggacgttccacattggtggtgcg
gccagtcgtacttccgcggtcgacaacgtcatggtgaagaacggcggcaccattcgcttg
cacaacctgaagcacgtagagcgtgccgacggtgcgctggtcgcggtttcccgttcgggc
gagctggcggttgccgacgacttcggtcgtgagcgcgagcgttacaagctgccatacggt
gcggtgatttcggtgaaggagggcgacaaggttgacgccggtgcggtggttgccaagtgg
gatccgcacacccacccgatcgtcaccgagatgaagggcgtcgtgaccttcgtcgggatg
gaagagaatatcaccatcaagcgccagaccgatgagctcaccggcctgaccaatattgag
gtgatggatccgaaagaccgtccggcatcgggcaaggatattcgtccggcgatcaagatg
gtcgatgtcaatggcaaggagctgctgctcccgggtaccgacgttcctgcccagtacttc
ctgccggctaacgcactggtgggcgtggccgacggcgccgagatcaatgtgggtgacgtt
atcgcacgtatcccacaggaaacctcgaagacccgcgacatcaccggcggtctgccgcgc
gttgcggacttgttcgaagcgcgtcgtccgaaggagccgtccatcctggcggaaatcagc
ggtacgatttccttcggtaaggaaaccaaaggcaagcgccgtctggtgattactccgacc
gatggcagcgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgagcaggtgaacaagggtgaagtgatctccgacggtccgagcaatccgcacgacatc
ctgcggctgttgggtgtaagcgccctggccaagtacatcgtcaacgagattcaggacgtg
taccgcctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcgccagatg
ttgcgcaaggtcgaaattagcgagtcgggtgattccagcttcatcaagggcgaccagatg
gagttgacccaggtgctggaagagaacgagcgtttgagcgaggaagacaagtttgtctcc
aagtacgtgcgtgttctgctgggcattaccaaggcatcgctgtcgaccgagtcgttcatt
tcggcggcgtccttccaagagaccacgcgtgtactgaccgaggctgccgttaccggcaag
cgcgattatctgcgtggcctcaaggagaacgtagtcgtaggtcgtctgatcccggccggt
accggtctgcaataccacagcgagcgcaagcgcaagcgtgaagcagacaaacccgttcgt
gtgagtgctgatgaggtcgaagcggctctgaccgaggcgctgaactccagcggtaactaa
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integrated database retrieval system
