Stutzerimonas decontaminans: UIB01_20220
Help
Entry
UIB01_20220 CDS
T03366
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pstu
Stutzerimonas decontaminans
Pathway
pstu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pstu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UIB01_20220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pstu03019
]
UIB01_20220
03400 DNA repair and recombination proteins [BR:
pstu03400
]
UIB01_20220
Enzymes [BR:
pstu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UIB01_20220
Messenger RNA biogenesis [BR:
pstu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UIB01_20220
DNA repair and recombination proteins [BR:
pstu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
UIB01_20220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
EccE
Motif
Other DBs
NCBI-ProteinID:
AHY44675
UniProt:
A0A023WY54
LinkDB
All DBs
Position
complement(4261186..4263111)
Genome browser
AA seq
641 aa
AA seq
DB search
MIEQTLVQTFGYDRFRTGQEQAIRAVVAGRSVAAIFPTGSGKSLCYQLPALLLPHLTLVV
SPLLALMQDQLAFLHRNGIAAGSIDSAQSREQASETMARAKSGELKILMISVERLKNERF
RNFISQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQVLLLTATATPPVIAD
MQAKFSIAADDVVTTGFYRPNLNLLVEPVSGLNKQRRLVEWLADKGGQPTIVYVTQQKTA
EQVAEHLAQRGFPASAYHAGMAHELREAIQRRFMAGELNCIVATIAFGMGIDKADIRNVV
HYDLPKSVENYSQEIGRAGRDGKPSDCLVLANRDSLSVLQNFVYGDTPERKGIRCVLDEL
LQAGSGGQWELMLNQLSDQSNIRQLPLKTLLVQLELRGIIAPRFAYFAEYRFKYLLEPEV
LVAKFEGERRQFVEAIVHSSARARTWCTLDFDALYQQHGADRARVVKALEYFQEKGWIEL
ESKQMTEVYALLDTGFDAEALSDELHAYFKQHEASEITRIDNMLALFESAECLSQRLAAY
FGDRQAPQHCGHCSVCRGQVAQLPEPPTLAPLDQTDLAGHCVEFSQRYTQLQGDAPSTEC
LTRFLCGISVPVFTKLKARQIPGFASLEAYPYAEVRARLTR
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagcagaccctcgtccagacattcggctacgaccgcttccgtaccggccaggag
caggccattcgcgctgtggtggccggccgttcggtggccgcgatctttcctaccggctcc
ggaaaatccctgtgctaccagctgccggcgctgctgttgccgcatctgaccctggtggtc
tcacccttgttggcactgatgcaggaccagctggcctttctgcaccggaacggcattgcc
gccggcagcatcgactcggcgcagagccgcgagcaggccagcgagaccatggcccgggcc
aagtccggtgaactgaagatcctgatgatttcggtggagcgactgaagaacgaacgcttc
cgtaacttcatcagccaggtgccgatctcgctgctggtagtggacgaggcgcactgcatc
tccgagtgggggcacaacttccgcccggattacctcaagcttcccgactaccagcgtcag
ttcaacattccccaagtgctgctgctgaccgccacggcgacgccgccggtgatcgccgat
atgcaggccaaattctcgattgcggcggacgacgtcgtgactactggcttctaccggccc
aacctcaatctgctggtggagccggtcagcggcttaaacaagcagcgccggctggtggaa
tggctggccgacaagggtggtcagccgaccatcgtctacgtcacccagcagaagaccgcc
gagcaggttgccgagcatctggcgcagcgcggcttcccggccagcgcctaccacgccggc
atggcccatgagttgcgtgaggcgatccagcgccgcttcatggccggcgagctgaactgc
atcgtcgccaccatcgccttcggcatgggcatcgacaaggcggacatccgcaacgtggtg
cactacgacctgcccaagtcggtggagaattacagtcaggagatcggtcgagccgggcgc
gatggcaagccatcggactgcctggtgctggccaaccgcgacagcctcagcgtgctgcag
aacttcgtctacggcgatacgccggagcgcaagggcatccgctgcgtactcgacgagctg
ctgcaggcgggctcaggcggacagtgggagctgatgctcaaccagctatcggaccagagc
aacatccgccagctgccgctgaaaaccctgctggtgcagctggagctgcgcggcatcatc
gcgccacgcttcgcctatttcgccgagtaccgcttcaagtacctgctcgaacccgaggtg
ctggtggcgaaattcgaaggcgagcggcggcagttcgtcgaggccatcgtgcacagctca
gcgcgggcacggacctggtgcactctggatttcgacgcgctctatcagcagcacggcgcc
gaccgcgcgcgggtggtcaaggcactggagtacttccaggaaaagggctggatcgagctg
gagagcaagcagatgaccgaggtctatgcgctgctcgacacgggcttcgatgccgaagct
ctgagcgacgagctgcacgcctatttcaagcagcacgaagccagtgaaatcacccgcatc
gacaacatgctggcgctgttcgaatccgccgaatgcctgagccagcggctggccgcctat
ttcggtgatcgccaggcaccacagcactgcgggcattgctcggtctgtcgtggacaggtc
gcgcaactgccggaaccgccgacgctggcgccactggatcaaacggacctggccggccac
tgcgtcgaattcagtcagcgctacacgcagctacaaggcgatgcgcccagcaccgaatgc
ttgacgcgctttctctgcggcatcagcgtgccggtgttcaccaagctcaaggcgcgacag
atccccggtttcgcctcgctggaggcttatccctacgcagaggttcgcgcgcgcctgacg
cgctaa
DBGET
integrated database retrieval system
