Pantoea stewartii subsp. stewartii: DSJ_00250
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Entry
DSJ_00250 CDS
T04970
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pstw
Pantoea stewartii subsp. stewartii
Pathway
pstw03030
DNA replication
pstw03410
Base excision repair
pstw03420
Nucleotide excision repair
pstw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pstw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSJ_00250
03410 Base excision repair
DSJ_00250
03420 Nucleotide excision repair
DSJ_00250
03440 Homologous recombination
DSJ_00250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pstw03032
]
DSJ_00250
03400 DNA repair and recombination proteins [BR:
pstw03400
]
DSJ_00250
Enzymes [BR:
pstw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DSJ_00250
DNA replication proteins [BR:
pstw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DSJ_00250
DNA repair and recombination proteins [BR:
pstw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
DSJ_00250
NER (nucleotide excision repair)
GGR (global genome repair) factors
DSJ_00250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH
HHH_5
DUF2529
Motif
Other DBs
NCBI-ProteinID:
ARF47962
UniProt:
H3RII8
LinkDB
All DBs
Position
complement(55576..58359)
Genome browser
AA seq
927 aa
AA seq
DB search
MAQIAENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLKSLLVQYSPTHVAV
VFDAKGKTFRDELFEHYKSHRPPMPDDLRSQIEPLHEMVRAMGLPLLAVSGVEADDVIGT
LALEAEKKGYSVLISTGDKDMAQLVTPAITLINTMTNTILGPEEVEQKYGVPPALIIDFL
AMMGDSSDNIPGVPGVGEKTAQALLQGLGGMQSIYDNLDKVADLSFRGAKTMATKLEQNR
EVAFLSYQLATIKTDVALDQPCEALTVGEPDIQALQALFSRYEFRRWLTDLQEGKWLQGK
KSNRQAQQVLVDEPVKAEATSVLSAEGYVTILDQQTLDNWVEKLKKSDVFAFDLETDALD
TLTANIVGLSFAIAPGEAAYLPVAHDYLDAPEQLDRDAVLAQLKPLLEDPDVSKVGQNLK
YDRGVLKNYDIELAGIKYDTMLESYILNSVVGKHDMDSLSARWLNHKTVTFEEIAGKGKN
QLTFNQIALEQAAHYAAEDADVTLQLHLKMWPELEKEAGPKKVFEQIEMPLLRVISRIER
NGVLIDQAILAQHSKELTARLAELEREAHELAGEPFNLSSTKQLQVILFEKQGIKPTKKT
PGGAPSTSEEVLAELALDYPLPKVILEHRGLSKLKSTYTDKLPLMINPVTGRVHTSYHQA
VTATGRLSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNRIVAADYSQIELRIMAHLSQDKG
LLDAFSQGEDIHRATAAEVFGVPLSKVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAG
EAKKYMDLYFERYPGVLRYMENTRQLAASNGYVETLDGRRLWLPDIKSSNAIRRKAAERA
AINAPMQGTAADIIKRAMIAVDNWLQEQRSDAVKMIMQVHDELVFEIKEEAVEAASKQIR
TLMEGSMALDVPLLVEVGVGDNWEQAH
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaatagcagaaaaccccctgattttggttgatggctcatcctatctttatcgc
gcgtaccacgctttcccgccgctgacgaacagtgcaggagagcctaccggtgctatgtat
ggcgtgctgaacatgcttaaaagcctgttggttcaatacagccctacacatgttgctgtg
gtgtttgatgctaaaggcaaaaccttcagggatgagctgtttgaacattacaaatctcat
cgcccgcccatgcccgacgatctgcggtcacagattgagccgttacacgaaatggtgcgt
gcgatgggattgcctctgctggccgtcagcggtgtcgaagcggatgatgtgattggtacg
ctggcgttagaagccgaaaaaaagggttactctgtccttatcagtacgggcgacaaagat
atggcgcagctggtgacgccagcgataacgttaatcaatacgatgactaacaccattctt
gggccggaagaagttgagcaaaagtatggtgtgccacccgccttgatcatcgattttctg
gcgatgatgggcgacagctcagataacattccaggcgtaccaggcgtgggtgaaaaaacg
gctcaggccctgctacagggactgggagggatgcagtcgatctacgataatctcgataaa
gttgccgatctttcattccgtggtgccaaaactatggccacaaagctggaacaaaaccgc
gaggtggcgtttctctcctatcaacttgcgaccattaaaacggatgtagcgctggatcag
ccttgtgaggcgctcaccgtcggtgaaccggatattcaggccttgcaggcgctgtttagc
cgttacgagttcaggcgctggttgaccgacctgcaagagggaaaatggctgcagggtaag
aaaagcaaccgacaggcccaacaggttcttgtcgatgagcctgtaaaggcggaagccaca
agcgtcttgtctgccgagggttatgtcaccatcctggatcagcaaacgctggacaactgg
gttgagaagctgaaaaaaagcgacgttttcgcgtttgaccttgaaaccgatgcgctggac
acgttaacagccaacattgtgggtctcagtttcgccatcgcgccaggcgaagcggcttat
cttcctgtcgcgcatgattatcttgatgcgcccgagcagcttgatcgcgatgcggtgctc
gcacagctcaaaccgctgctggaagatcctgatgtcagcaaagtggggcaaaacctcaag
tacgatcgcggtgtccttaagaactacgatattgagttagcaggcattaaatatgacacc
atgcttgagtcgtacatcctgaacagtgtggtgggcaaacatgatatggacagcctgtcg
gcacgctggttgaatcataaaacggtcaccttcgaagagatcgccggtaagggtaaaaat
cagcttacgtttaatcagatagcccttgagcaggctgcgcattatgcggcagaagatgct
gacgtcacgttgcagttgcacctgaagatgtggcctgagcttgaaaaagaagccggcccg
aaaaaggtgttcgaacagatcgagatgccgttgctcagggtcatttcgcgcattgagcgt
aatggtgtgttgatcgatcaggccatcttagcgcagcactcaaaagagctgacagcgcgc
ctggctgaactggaacgtgaagcgcatgaactggcaggcgagccgtttaatctctcttcc
acgaagcagctgcaggtcatcctgtttgaaaagcagggcatcaagcccaccaagaaaacg
ccgggtggtgcgccgtcgaccagcgaagaagtgctggcagagctggcgctggactatcca
ttaccgaaagtcattctggagcaccgtgggctgtcaaaactcaagtccacgtacaccgat
aagctgccgttgatgatcaatcctgtaaccggccgcgtgcatacgtcttaccatcaggcc
gtcaccgcgaccggacgtttatcatctaccgatcctaatctgcaaaacatcccggtgcgg
aatgacgaaggacggcgcattcgccaggccttcgtagcaggcaaaggcaaccgcatcgtc
gcggcggactactcgcagattgaactgcgtatcatggcccatctgtcgcaggataaaggc
ctgctggacgcgttctcgcagggagaagatatccaccgggctaccgcagcggaagtgttt
ggcgtaccgctcagtaaggtgacgggtgaacaacgtcgcagcgcgaaggccatcaacttt
ggtctcatctacggtatgagtgcatttggcttatcccgccagctgaatatcggtgcaggt
gaggcgaagaaatatatggatctgtacttcgagcgctatccaggcgtcctgcgctacatg
gaaaatacccgtcagctcgccgcgagtaacggttatgtcgaaacgctggacgggcgtcgc
ctgtggttgcctgacatcaagtccagcaatgcgatacgacgtaaagcggcagaacgcgcc
gcaatcaatgcccccatgcaaggaacggcggccgatatcattaaacgcgcgatgatcgcg
gttgataactggttacaggaacagcgaagcgacgcagtgaagatgattatgcaggtgcac
gatgaactggtgttcgaaatcaaagaggaggccgttgaagcggccagtaagcagattcgt
acgctaatggaaggcagtatggcgctggatgtgcccttactggttgaagttggggtaggg
gataactgggagcaggcacactag
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