Pantoea stewartii subsp. stewartii: DSJ_04100
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Entry
DSJ_04100 CDS
T04970
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pstw
Pantoea stewartii subsp. stewartii
Pathway
pstw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pstw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSJ_04100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pstw03019
]
DSJ_04100
03009 Ribosome biogenesis [BR:
pstw03009
]
DSJ_04100
Enzymes [BR:
pstw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSJ_04100
Messenger RNA biogenesis [BR:
pstw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSJ_04100
Ribosome biogenesis [BR:
pstw03009
]
Prokaryotic type
rRNA helicases
DSJ_04100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ARF48614
UniProt:
H3RJS2
LinkDB
All DBs
Position
840210..842078
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AA seq
622 aa
AA seq
DB search
MTDIQTTFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLNNIDPTIKAPQILVLAPTRELAVQVAEAMTEFSKHMRGLNVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSYWTAYGRKTDALVRFLE
AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLEQYRALLTKMQPEEELDIETL
AAALLKMAQGERPLIVPADAPRPPRREFRERDDRRDSRGPRDSRDGDRPRRERRDVGDMQ
LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGDVLQHFTR
TRILNKPMNMQLLGDAQPHESGRGERRSGSGERRGPRPEGQGRRFSSERREGGREGGRSF
NREGGHGPRREDGAAAPRRRDA
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgactgatattcaaaccacttttgcagaccttggcctgaacgccgacatccttgaatca
ctgaacggcatgggctacgtaaagccatccccaatccaggctgagtgtattcctcacctg
ttggcgggccgtgacgtgttaggcatggcgcagaccgggagtggtaaaacggcagcgttc
tctctgccgctgttaaacaacattgatccgactattaaagcaccgcaaattttggtgctg
gctcctacccgcgaactggcggttcaggttgctgaagcgatgaccgaattctctaagcac
atgcgcggtctgaacgtagttgccctttacggcggccagcgttatgacgtgcagctgcgt
gctctgcgccagggaccccaggttgttgtgggaaccccaggtcgtctgctggatcacctg
aagcgtggcacgttagatctgtctaatctgcgtggtctggtgctggacgaagcagatgaa
atgttacgtatgggcttcatcgaagacgttgaaaccatcatggcgcagatcccggaaggt
catcagaccgcgctgttctctgccaccatgccagaagcgattcgtcgtatcaccaagcgt
ttcatgaaagatccgcaggaagtgcgtattcagtcgagcctgacaacgcgtcctgacatc
agccagagctactggacggcttacggccgtaaaaccgatgcactggttcgcttcctggaa
gcagaagattttgatgcggcgatcatcttcgttcgtaccaaaaatgccactctggaagtc
gctgaagcgctggagcgtagcggttacaacagcgcggccctgaacggtgatatgaaccag
gccctgcgtgagcagacgctggagcgtttgaaagatggtcgtctggacatcctgatcgcg
actgacgttgcggctcgtggcctggacgttgagcgtatcagcctggttgttaactacgat
atcccgatggacgccgaatcttacgttcaccgtattggccgtacgggtcgtgcgggtcgt
gcggggcgcgcactgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatcgaa
cgcaccatgaagctgactattccggaagttgagctgccaaacgcagagctgctgggtcag
cgtcgtctggctaagtttgccgcgaaagttcagcagcaactggaaagcagcgatctggaa
cagtaccgtgcactgctgaccaaaatgcagcctgaagaagagctggatatcgaaacgctg
gctgccgccctgctgaaaatggcacagggtgagcgtccgctgatcgtacctgctgacgca
ccgcgtcctccgcgccgcgaattccgtgagcgtgatgatcgtcgcgacagccgtggtcca
cgtgacagccgtgatggcgatcgtccacgtcgtgagcgtcgcgatgttggcgacatgcaa
ctgtatcgcattgaagtgggccgtgatgacggtgttgaagttcgtcacatcgttggcgcg
attgctaacgaaggcgacatcagcagccgttacatcggtaacatcaaactgtttggtacg
cactcgacgatcgaactgccgaaaggcatgccgggcgatgtcctgcagcactttacccgt
acgcgtattctaaacaagccgatgaatatgcaactgctgggtgatgcacagccgcatgaa
agtggccgtggtgagcgtcgttcaggttctggcgagcgtcgtggtcctcgtcctgaaggt
cagggccgtcgtttctcttctgagcgccgtgaaggtggtcgtgaaggtggacgcagcttt
aaccgtgaaggcggtcatggtccacgtcgtgaagacggtgctgctgcacctcgtcgtcgt
gacgcataa
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