Pantoea stewartii subsp. stewartii: DSJ_04850
Help
Entry
DSJ_04850 CDS
T04970
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pstw
Pantoea stewartii subsp. stewartii
Pathway
pstw03410
Base excision repair
pstw03430
Mismatch repair
pstw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pstw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DSJ_04850
03430 Mismatch repair
DSJ_04850
03440 Homologous recombination
DSJ_04850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pstw03400
]
DSJ_04850
DNA repair and recombination proteins [BR:
pstw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DSJ_04850
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DSJ_04850
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DSJ_04850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ARF48740
UniProt:
H3RH15
LinkDB
All DBs
Position
988796..990535
Genome browser
AA seq
579 aa
AA seq
DB search
MVKHEVELRRREAVPDLPGLPADLPPLLRRLYLQRGVSDAAQLERGAKNLLPFSALSGID
KAVALLHEALLDGRCIMVVGDFDADGATSTALTVLALRSMGCSNVQYLVPNRFEDGYGLS
PEVVEQAKARGAEMLLTVDNGISSHAGVAVAHAHGIAVLMTDHHLPGETLPDADAIVNPN
LPDCTFPSRALAGVGVAFYLMMALRAHLRTQGWFGVTRAEPNLADLLDLVALGTVADVVP
LDANNRILVWQGLSRIRAGKCRPGIKALLEIANRDARQLAASDLGFALGPRLNAAGRLDD
MSVGVALLLTDDLSQSRMLASELDALNQMRKEIEQGMQSEALALCQTLEREQTDLPLGLA
FYHPEWHQGVVGILASRLKERFHRPVIAFAPAGDGMLKGSGRSIAGLHLRDALERLDTLH
PGLMQKFGGHAMAAGLSLEEARYEEFRQRFAELVGDWLAGEALQGVMWSDGALQPAEFSL
ETAEMLRDAGPWGQAFPEPAFDGKFRLLQQRLVGERHLKVMVEPLGGGPLIDGIAFNVDT
TLWPDSSVREVELAYRLDINEYRGNRSVQLIIEHLWPLS
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
gtggtaaagcacgaagtcgaattacgtcgtcgtgaggcggtaccggatttgcccgggctc
cctgctgatttgccgccgcttctgcgtcggctttatttgcaacgcggcgtcagtgatgcc
gctcagcttgaaagaggcgcgaaaaacctgctgccgtttagtgcgctgagcggtattgat
aaggccgtcgccttgctgcatgaagcgctgctggatggacgctgtattatggtcgtcggc
gattttgatgctgacggtgccaccagtaccgcgcttaccgtgctggctctgcgcagcatg
ggatgcagcaatgttcagtatctggtacctaaccggtttgaggatggatacggcctcagt
cctgaggttgtcgaacaggcgaaagcgcgcggcgcggagatgctcctcactgtcgataac
ggtatttcctctcatgctggcgtcgccgtcgcgcatgcgcacgggattgcggtgctgatg
accgaccaccatttacccggcgaaacgctgcctgacgcggacgctatcgttaacccaaac
ctgcctgattgcactttcccgtcgcgtgcgctggcaggcgttggtgtggccttttacctg
atgatggcgctgcgtgcccatctgcgaacccagggctggtttggcgtcacgcgggcagaa
cctaacctggctgacctgctcgatctggtggcgctgggcacggttgcggatgtcgtgccg
ctggatgcaaataaccgtattttggtctggcagggcctgagccgcattcgtgccggtaaa
tgccgaccgggcatcaaggcgctactggaaatcgccaatcgcgatgcgcgccagctggcc
gccagcgacctggggtttgcgctgggaccgcggctgaatgcggccgggaggctcgacgat
atgtcggtcggcgtcgcgctgttactgacggacgatctcagccagtcgcgtatgctagcc
agcgagctggatgcgctcaaccagatgcgcaaagagattgaacagggcatgcaaagcgag
gcgctggcgctctgtcagacgctggagcgtgagcaaaccgatttgccgctggggctggcc
ttttatcatcccgaatggcatcagggcgtggtaggtattctggcttcccggctcaaagag
cgttttcaccgtccggtcatcgcctttgcgcctgcgggcgacggcatgctgaaaggctcg
ggacgttcgattgcgggcctgcacctgcgggatgccctggaacggcttgatacgctccac
cccgggctgatgcagaagtttggtggtcacgccatggcggccgggctgtcgctggaggag
gcgcgctacgaggagtttcgtcagcggttcgctgaactggtcggcgactggctggctggc
gaagcgctgcaaggggtgatgtggtctgatggcgcgttacaacccgctgagttttctctg
gagaccgccgaaatgctgcgcgatgccggtccctggggacaggcctttccggagcctgcg
tttgacggcaaattccggctgttgcagcagcggctggtgggggaacgtcatctgaaagtc
atggtggagccactgggcggcgggccactgatcgacggcatcgcgtttaacgtagatacc
acgctgtggcctgacagcagcgttcgcgaggttgaactggcgtaccggctggatatcaat
gaatatcgcggtaaccgctcagtgcagttgattattgaacatctctggccgctcagttaa
DBGET
integrated database retrieval system
