Pantoea stewartii subsp. stewartii: DSJ_04970
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Entry
DSJ_04970 CDS
T04970
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pstw
Pantoea stewartii subsp. stewartii
Pathway
pstw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pstw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DSJ_04970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pstw03400
]
DSJ_04970
Enzymes [BR:
pstw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DSJ_04970
DNA repair and recombination proteins [BR:
pstw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DSJ_04970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ARF48759
UniProt:
H3RGZ3
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All DBs
Position
1017733..1021272
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AA seq
1179 aa
AA seq
DB search
MTASRPEPLNPLTLPLNGERLIEASAGTGKTFTIGLLYLRLLLGLGGENAWRRPLSVEEI
LVVTFTEAATAELRGRIRDNIHQLRLACVRGKSHNTMHQQLIEQIADLPQAASLLLAAER
QMDEAAIFTIHGFCQRMLNLNAFESGMLFEQELIENEQTLLRQAAADFWRRQCYPLSLDV
ARVIAAEWSGPDSLLTTLRPWLQGESPRLKRPPRADETLASRHTANLQRIQALKQQWQTV
CADIEGMIAASGVDKRSYSSKHLPNWVAKVTQWAQSDTLDYQFPKELERFGQQVLHEKTK
KGEAPQHALFDAVDGFLAEPLTLRDIIIWQALSEVKETVQREKRQRALLGFDDLLSRLDE
ALQQPGGALLAETIRGRFPVALIDEFQDTDPQQYRIFRTLYIQQPDVALLLIGDPKQAIY
AFRGADIFTYLRARSEVSAHYTLETNWRSSPAMVNSVNRLFSQVDAPFLFSSIPFLPVSP
AAPNQALTLVYHDQPQPALRFWLQPGEGVGVSDYQQFMAQQCAADISRWLVAGQQGKARL
GKGDALQPVKASDITVLVRSRNEASLIRDALNKLAIPSVYLSSRDSVYTTPEARELLWLL
QAVQSPEQERLLRSALATSIFAIDAAQLDALAQNEREWDALVEQFVSWQQIWQQRGVLPM
LRDVMIKRQLAENMLASENGERRLTDLMHLGELLQEAATQLDSTHALVRFLAQQIARPDS
QAASQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFAAGFREAASALYHDRESFAAMLDV
QGDAQSLTLAEEERLAEDLRLLYVALTRSVYHCSVGIAPLIKGARKKEGDSDLHKSALGY
LVQRGESGDAAVLSHHLEALAGEGIEVIRSELQPGAKWQDSEHRENALSSREMTRALADS
WRVTSYSGLQQHGSSPLLDALPKFDIDAAGEAAEDEEPLLTPHHFPRGAAPGTFLHGLFE
AMDFTEPPDAFWLEDQLQQQGYSLNWLPVIEQWIARVLTTPLNKDGLTLDSIRSADRLIE
MEFYLPINHLLTAADLDALMRRHDPLSQRAAALDFRQVRGMLKGFIDLVFRWQGKYYLLD
YKSNWLGDSHTAYTQEAMAQAMIDHRYDLQYQLYTLALHRYLQHRLAGYDYQQHFGGVFY
VFLRGVDGTSADNGIFTTRPDPAFIEELDALFGHTEESL
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgtccagacctgaaccgttaaaccccctaacgctgcccctcaacggcgagcgg
ttaattgaagcctcagcgggcaccggtaaaacctttacgattggtctgctctacctgcgt
ttgttattagggctggggggcgagaacgcctggcgcaggccgctgtcagtcgaagagatc
ctagtggtgacttttacagaagccgccacggcggagctgcgcggccgtattcgtgacaat
attcatcagcttcggctcgcctgcgtgcggggtaaaagccataacaccatgcaccaacag
ctgattgaacagatagcggatttgccccaggcggcctcgctgctgctggcggctgagcgg
caaatggatgaagcggcgatttttaccattcatggtttttgccagcgcatgctcaacctg
aatgcctttgagtcaggcatgttgttcgagcaggaactcatcgaaaacgaacaaacgtta
ctccgccaggccgcggcggatttctggcgtcgccagtgttatcccctgtcactggatgtg
gcccgggtgatcgcggcggagtggagcggcccggacagtttgttgacgacgttacggccc
tggctgcagggggaatcccccaggctgaagcgtccgcctcgcgcagacgaaacgctggca
tcacgtcataccgctaacctgcaacgcatccaggccctcaagcagcagtggcagactgtc
tgtgccgatatcgaagggatgatcgcggcttccggcgtcgacaaacgcagctacagcagt
aagcacttacctaactgggtggcgaaagtgactcagtgggcacagagcgatacgctggat
taccagtttcctaaagagcttgaacgctttggccagcaggtgctgcacgaaaaaaccaaa
aagggcgaggcaccgcaacatgcgctgttcgatgccgtcgatggctttcttgccgaaccg
ctgacgctccgcgatatcatcatctggcaggcgctgagcgaggtgaaagaaacggtgcag
cgggaaaaacggcagcgtgccttgctgggatttgacgatctgttaagtcgtctggatgaa
gcgcttcagcagccgggcggggcgctgctggccgaaactattcgtggccgtttcccggtg
gccctgattgacgagtttcaggataccgacccgcaacagtaccgaatcttccgtacgctg
tatattcaacagccggatgtggcgttgctgctcattggcgatcccaagcaggcgatctat
gcgtttcgcggcgcagatatttttacctacttacgcgcccgtagtgaagttagtgctcac
tatacgctggagacgaactggcgctcatcgcccgcgatggtgaacagcgtcaaccgcctg
ttttcacaggttgacgcaccctttttattttcttccattccgtttcttccggtcagcccg
gccgccccgaatcaggcgttaacgctggtttaccatgatcagccccagccagccttgcgc
ttctggctccagccgggcgaaggtgttggagtaagtgattaccaacaatttatggcccag
cagtgtgcggccgatatcagccgctggctggtggccggtcagcagggcaaggcgcggtta
gggaaaggcgatgcactgcagccggttaaggcctcggatatcaccgtactggtgcgtagc
cgcaatgaagccagtctgattcgtgacgcgctgaataagctggctattccgtcggtctat
ctttccagccgcgacagcgtttataccacgcctgaagcgcgcgagctgttatggctgttg
caggcggtgcagtcacctgaacaggagcgactgctgcgtagcgcgctggccacgtccatc
tttgctatcgatgccgcccaacttgatgcgctggcgcaaaacgaacgtgagtgggatgcg
ctggtagagcagtttgtcagctggcagcagatctggcagcaacgtggcgtactgcccatg
ttgcgcgatgtaatgattaaacggcagttggcggaaaatatgctggcttccgaaaatggc
gagcggcgcttaaccgatctgatgcatctgggcgaattactgcaggaagcggcaacgcag
ctcgacagcacgcatgctctggtgcgtttcctggcacagcaaattgcccgccctgacagc
caggccgccagtcagcagctgcgtctggaaagcgatcgccatctggtgcagatcgtcacg
attcacaaatccaaaggcctgcagtatccgctggtctggctgccgtttgcggccggattt
cgcgaagcggccagcgccctgtatcacgaccgtgaaagttttgctgccatgctcgacgta
cagggcgatgcacagagcctgacgctggcggaagaggagcgactggccgaggatttacgg
ctgctctatgtcgcgctgacgcgctcggtttaccactgcagcgtgggtattgcgccccta
atcaaaggcgcgcgtaaaaaagagggcgacagcgatctgcataagagcgcgctgggctac
ctggtacagcgcggtgagagcggcgatgccgccgtgctcagtcaccatcttgaggcgctc
gcaggcgaagggattgaggtgatacggagcgagctgcagcccggcgcgaagtggcaggac
agcgaacaccgcgagaacgcgctgagcagtcgggaaatgacccgagcgctggcggacagt
tggcgcgtcaccagttactccggattacaacagcacggcagttcccccctgctggatgct
ttgccgaaattcgatattgatgctgctggtgaggcggctgaggatgaagagcccttgtta
acgccgcaccatttcccccgcggtgcggctcccggcacgtttctgcacgggctgtttgag
gccatggatttcactgagccgccggacgcattctggctggaggatcagcttcagcaacag
ggctattccctgaactggctgcccgtgattgagcagtggatcgcccgcgtactgaccacg
ccgctcaacaaagacggcttaaccctggacagcatccgcagcgctgatcggctgattgag
atggagttttacctgccgatcaaccacctgctgacggctgccgatctggatgcgctgatg
cgccggcacgatccactgtcgcagcgcgctgccgcgctggatttccgtcaggtgagaggc
atgttaaaagggtttattgatttggtatttcgctggcagggaaaatattatctgctggat
tacaaatcgaactggctgggtgacagccataccgcgtatacgcaggaggcgatggcgcag
gccatgatcgaccatcgctatgacctgcaatatcagctgtacacactggcgctgcaccgg
tatctgcagcaccgcctggcgggctatgattaccaacagcattttggcggcgtcttttat
gtattcctgcgcggggtggatggcacctctgccgataacggcatctttaccactcgtccc
gatcccgcctttattgaggaactggatgcattgtttggtcatacagaggagagcttatga
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