Pantoea stewartii subsp. stewartii: DSJ_05690
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Entry
DSJ_05690 CDS
T04970
Name
(GenBank) ATP-dependent dsDNA exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pstw
Pantoea stewartii subsp. stewartii
Brite
KEGG Orthology (KO) [BR:
pstw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pstw03400
]
DSJ_05690
DNA repair and recombination proteins [BR:
pstw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DSJ_05690
Archaeal homologous recombinant proteins
DSJ_05690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_23
AAA_29
SMC_N
FadA
AAA_21
NTPase_1
nSTAND3
cobW
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ARF48877
UniProt:
H3R888
LinkDB
All DBs
Position
1157511..1161185
Genome browser
AA seq
1224 aa
AA seq
DB search
MKILTLRFKNLNALKGEWFIDFRTEPFASNGLFAITGATGAGKTTLLDAICLALYHQTPR
LGGISQGHNPLMTRDCAECLAEVEFEIKGEAWRAFWSQNRARGTADGKLQAPRVELARCA
DNQIVADKVSDKLKLTETLSGLDFARFTRSMMLSQGQFAAFLNAKANERAELLEELTGTE
IYGRLSMAVFERHKAAKTALELLRSRAGGMALLDEATRTALHQQKKALSDAEHQLTAALA
VAQAQQQWQQQHQQAIADTEQATAALAAAEHASQAAEPDRQRLARSEPAEKLRGPLQQRD
SLLAERNAMRERQQQLSQQMHTATQAHHVLQQRYAETDTAHEQCRQQQQQQETLLTGQVI
PLDQSLSALYEHIQQLQQDAERQQQHCAQREAALHSEARQVRHLQETIAQQHALREQLAD
MPQWGEHLPIWKERFAQLTRYEATQAELDQQIQQQQRHIHQRQGDIEQLAQQLTPLDQAA
QQAQQSLSQAEQALTSLQNAHPPEALRQALSQHQQQREARHALTIVAAQWQPLHQQRTQY
EKRLHELETAQQQAESALLTLREAWRREKQQLSDVEKICQLESQIADLEQYRARLEAGQP
CPLCGACEHPAVETYRALEVSANQQRKAELQKQVDALSETGTAKKEQIKQLQAQQQSLRE
EITGLTQQLDDLSQQWQELSSELALTFPLTDTDARIAWQQAQNRHEQTLTARLDALEQAE
RAVLAATDHHLRQHQTLQQHQQTLLLTQQQLESQHQALQALQQQQRQAAENGQQLEAALA
QQFSDVALSLPERTARDSWLANQQERWQRWQESERLLANLQPQLARAETQADALQQQLQL
EQQRLDQQRQQLTALQQQAHEKQQQRQALFGDRDVAQARQQMQVLVDQHEAQLTQQRNAL
HQSQAEVSRLNGQLTLLESQLQSLSGRVTEAEQRFSAALAAAEFADETHLRAALLDEQAA
QQLRQQLQQIDQHRLHQQARLAELQQRLAAHQQQKPALMPDSPYVLAAELARLQQSLREN
ANQQGQVQQQLDSDASLRNQQQTLLARIAQDETALAQWTLLNDLIGSATGDKFRRFAQGL
TLDHLVALANRQLDRLHGRYLLQRRASDVLELDVVDTWQADSARDTRTLSGGESFLVSLA
LALALSDLVSHKTRIESLFLDEGFGTLDAETLDTALDALDALNASGKTIGVISHVEAMKE
RIPVQIKVRKMNGLGYSTLDIPGQ
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctgacgctgcgcttcaaaaatcttaacgcgctcaaaggtgagtggtttatc
gatttccgcaccgagccgtttgccagcaacgggctgtttgcgattaccggcgcgacgggc
gccggtaaaaccacgctgctggacgccatctgtctggctctgtatcaccagacgccgcgc
ctgggcggcatctctcaggggcataaccccctgatgacacgcgactgtgccgagtgcctg
gcggaggtcgagtttgaaattaaaggcgaagcctggcgggcattctggagccagaaccgc
gcgcgcggcaccgctgacggtaaactgcaggctccccgcgttgagctggcgcgctgcgcc
gataatcagattgtggcagataaagtgagcgataagctcaaacttacggaaacgctgagc
gggctggattttgcgcgcttcacccgctcaatgatgctgtcacaaggccagtttgcggcg
tttcttaacgccaaagccaatgagcgggcagaactgctggaagaactgaccggaaccgaa
atttatggtcgtctgtccatggccgtgttcgaacgccacaaagcggccaaaacggcgctg
gaactgttacgcagtcgggcaggcggcatggcgctgcttgatgaggcaacccgtactgca
ctgcaccagcaaaaaaaggccctcagcgacgctgaacaccagctgactgccgcgcttgcc
gtggcgcaggcgcagcaacagtggcagcaacagcatcagcaggctattgcggatacagag
caggcaaccgcggccctcgcagcggcagagcacgccagtcaggcggcagagccggatcgt
caacgtctggcgcgcagtgaaccggcggagaaactgcgcggtccgttgcagcaacgtgac
agtctgctggccgaacgcaacgcgatgcgggaacgtcagcagcagctcagccaacagatg
cacacggccacacaggcgcatcatgtgttgcagcaacgctatgcggaaacggacacggcg
cacgaacagtgccgacagcaacagcagcagcaggaaacgctgttgaccgggcaggtcatt
ccgcttgatcagtctctctctgccttatacgagcacattcagcagctacagcaggatgcc
gaacggcaacagcaacactgcgctcagcgcgaagccgcgttacacagcgaagcccgccag
gtgcgccacctgcaagagacgattgcccaacagcatgccctacgtgagcagttggctgac
atgccgcaatggggtgaacaccttccgatctggaaagagcgttttgcccaactgacccgc
tatgaagcgacacaggctgagctggatcagcagatacagcagcaacagcgccacatccat
cagcgccagggggatattgagcagctggcacagcaactcacgccactggatcaggccgca
cagcaggcgcagcagtccttgtctcaggctgagcaagcactaacttcccttcagaacgcg
catccacctgaagccttacgtcaggcactgagccagcatcagcaacagcgcgaggcgcgc
catgcgctgacgatagtggccgcgcagtggcaacccctgcatcagcagcgcacgcagtac
gaaaaacgcctgcatgaacttgagacggctcagcagcaggctgaaagcgcattgctgacg
ttaagagaagcctggcgacgggaaaaacagcagctcagcgacgtagagaaaatttgccag
ctcgaaagccagattgctgacctggaacagtaccgcgcccggcttgaagccgggcagccc
tgcccgttgtgcggcgcctgcgagcatcctgcggtcgaaacctatcgtgctctggaagtt
agtgctaaccaacaacgtaaagccgagctgcaaaaacaggtagacgcgttgagtgaaacc
gggacggcaaagaaggagcagataaagcagctacaggctcaacagcaatccctgcgtgaa
gaaatcacgggtctgacccaacaacttgatgacctttctcaacaatggcaggaactgagc
agtgagctggcgctcaccttcccgctgacagatacggatgcaagaatcgcgtggcagcag
gcgcaaaatcgccacgagcagacgctcacggcccggcttgacgcactggagcaagccgag
cgcgcggtgctggcggccacagatcaccacctgcggcagcaccagacattacaacagcat
cagcaaacactactgttgactcagcagcaactggaaagccagcaccaggcgcttcaggcg
ttacagcaacagcagcgtcaggccgcagaaaacggccagcagctggaagccgcgctggca
cagcagttcagcgacgtggcgttgtctttacctgaacgtacggcgcgcgacagctggctg
gcaaaccaacaagagcgctggcagcgctggcaagagagtgagcggttgcttgctaacctg
cagccgcaacttgcacgggcggaaacacaggctgacgcgctgcaacagcagttacagctt
gagcagcaacgcctggatcagcagcggcagcagctcaccgcgttacagcagcaggcacat
gaaaaacagcagcagcgtcaagccctgtttggcgatcgcgatgtggctcaggcgcgccag
cagatgcaggtgctcgtcgatcagcacgaggcgcaacttacgcagcagcgcaacgcactg
catcagtcacaggcagaggtcagccgtcttaatggccagttgacgctgctggaaagccaa
ctgcagagcctgtccgggcgcgtcacggaagcagaacaacgcttcagcgcggcgctggcg
gcggccgaattcgctgatgaaacgcacctgcgcgcggcattgctggatgaacaggcggcg
cagcaactgcgtcagcagcttcagcaaattgaccagcaccgtctgcaccagcaggcacgc
ctggcagaactgcagcagcggctggcggcacatcagcagcaaaaaccggctttgatgccg
gattcaccgtacgtgctggcggcagagctggcgcgcttacagcagtccctgcgtgaaaat
gcaaaccagcagggccaggtacagcagcagttagacagcgatgccagcctgcgaaaccaa
cagcaaacgctgctggcgcgtattgcgcaggatgagacggcgttagcgcaatggaccctg
cttaacgatcttattggctcggcaacgggcgataaattccggcgctttgcccaggggctt
acgctcgatcacctggtggccctggccaaccgtcagttagatcgcctgcacggtcgctac
cttttacagcgacgtgccagcgatgtgctggaactggatgtggtggatacctggcaggcc
gacagcgcccgcgatacgcgcacgctgtccggcggagaaagtttcctggtgagcctggcg
ctggcgctggcactgtctgacctcgtcagccataaaacccgcattgagtcgttatttctg
gatgagggctttggtacgctggatgccgaaacgctggacaccgctctggatgccctggat
gcgcttaacgccagtggcaaaactattggcgtcatcagccatgttgaagccatgaaagag
cgcattcccgttcagattaaggtacgcaaaatgaatggcctgggttacagcacccttgac
atccccggccagtaa
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