Pantoea stewartii subsp. stewartii: DSJ_06105
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Entry
DSJ_06105 CDS
T04970
Name
(GenBank) RNA polymerase-binding ATPase
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pstw
Pantoea stewartii subsp. stewartii
Brite
KEGG Orthology (KO) [BR:
pstw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pstw03021
]
DSJ_06105
Transcription machinery [BR:
pstw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
DSJ_06105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
Cas3-like_C_2
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ARF51851
UniProt:
H3R8G6
LinkDB
All DBs
Position
complement(1253791..1256697)
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AA seq
968 aa
AA seq
DB search
MVFTLGQRWISDTESELGLGTVVAIDTRMITLLFPATGENRLYARSDSPVTRVIFNPGDT
VTSHEGWQMRVDEVRNDNDLITYIGTRLDTEETNVMLREVMLDSKLVFSKPQDRLFAGQL
DRMDRFALRFRARKYQSEQYRLPVSGLRGMRTNLIPHQLHIAHDVGRRHAPRVLLADEVG
LGKTIEAGMIIQQQLLAGRAERVLIVVPETLQHQWLVEMLRRFNLRFALFDDDRYAEAQH
DSDNAFDTEQLIICSLDFVRRNKLRLDKLADADWDLLVVDEAHHLAWSEGEPSREYQAIE
KLAENIPGVLLLTATPEQLGMESHFARLRLLDPDRFHDFAAFVEEQQHFRPIADAVTSLL
ADNPISQDEMNMINELVGEQDIEPLLQVANSDREGKQEARQELISMLMDRHGTSRVLFRN
TRNGVKGFPKRELHTIRLPLPAQYQTAIKVSSIMGARKSAEERARDLLYPEQIYQEFEGD
TGTWWNFDPRVKWLMGYLTSNRKEKVLVICAQAATALQLEQVLREREGIRAAVFHEGLSI
IERDRAAAWFASEENGAQVLLCSEIGSEGRNFQFASRLVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQILVPWLEKTAQAVLLRWYHEGLDAFEHTCPTGRTLYDSVHAELINYLAAPENS
EGFDDFIDACRKQHDALKSQLEQGRDRLLELNSNGGDAAQMLANTIAEQDNDTELVNFAL
NLFDIVGINQEDRSDNLIVLTPSDHMLVPDFPGLPEDGCTITFNRDQALSREDTQFITWE
HPLIRNGLDLILSGDTGSCALSLLKNKALPVGTLLVELIYVVESQAPKHLQLTRFLPPTP
LRLLLDRKGTNLAGKVEFESFNRQLNAVNRHTGSKLVNAVQQDVHAILTLAEKEVVSEAS
AIIDTARREASEKLGAELSRLEALKAVNPNIRDDEVDALESNREQVLESLDEATWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggtttttacattaggtcagcgttggattagtgatacagaaagtgaactgggattaggt
accgtggtggcgatcgatactcgcatgatcacgctgctcttcccggccacaggggaaaat
cgcctctacgctcgcagcgactcgcccgtcacccgcgtgatttttaacccgggcgatacc
gtgaccagccatgagggctggcaaatgcgggtggatgaagtccgtaatgacaatgacctg
ataacctatatcggtacgcgcctggatactgaagaaaccaacgtgatgctgcgtgaagtc
atgctcgacagcaaactggtgttcagcaagccccaggatcgtctgttcgctggccagctc
gatcgcatggatcgcttcgccctgcgttttcgtgcgcgtaaatatcaaagtgaacagtac
cgcctgcccgtcagtggcctgcgtgggatgcgtaccaacctgattccccaccagttgcat
atcgcccatgatgtgggccgtcgccatgcaccgcgcgttctgctggcggatgaagtgggt
ctgggtaaaaccatcgaagccggtatgatcattcagcagcaactgttggctggccgcgct
gagcgcgtactgattgtggtaccagaaacgctgcaacatcagtggctggttgaaatgctg
cgccgcttcaacctgcgctttgcgctgttcgatgacgatcgttacgccgaagcccagcac
gacagcgacaatgccttcgacacggaacaactgattatctgttcgctggactttgttcgt
cgcaataagctgcgtcttgataagctggccgacgcggactgggatctcctggtggtcgat
gaagcgcatcacctggcctggtctgaaggtgagccaagtcgtgaataccaggccattgaa
aagctggccgaaaacataccaggcgtactgctactgaccgccacgccagaacagctgggc
atggaaagccacttcgcacgcctgcgcctgctcgatcccgatcgttttcacgacttcgcc
gccttcgtcgaagagcaacagcatttccgtccgattgccgatgcggtcacctccctgctg
gcggataatcccatctcgcaagacgagatgaatatgatcaatgagctggttggcgagcag
gatatcgaaccgctgctacaggtcgccaacagtgaccgcgagggcaaacaagaggcgcgc
caggaactcatttccatgctgatggatcgccacggcaccagccgcgtgttgttccgtaac
actcgtaacggcgtgaagggcttcccgaaacgggaattgcataccattcgcctgccgttg
ccggctcagtaccagacggccatcaaagtttccagcatcatgggcgcgcgtaaaagcgcc
gaagaacgcgcgcgcgacctgctctatccggagcagatttatcaagagtttgaaggcgac
accggcacctggtggaacttcgatccacgtgtaaaatggcttatgggctatctgaccagc
aaccgtaaagagaaggtgctggtgatttgcgcgcaggccgcaaccgctctgcaactggag
caggtattacgcgagcgtgaaggtatccgtgccgccgtattccacgaagggctgtcgatt
attgaacgcgatcgggctgcggcctggtttgcctcagaagaaaacggcgcacaggttctg
ctgtgttcagaaatcggctctgaaggccgtaacttccagttcgccagccgcctggttatg
ttcgatctgccgtttaacccggatctgctggagcagcgcatcggacgtctggatcgtatc
ggtcaggcgcatgacattcagattctggtgccatggctggaaaaaaccgctcaggcggtc
ctgctgcgctggtatcacgaagggctggatgcctttgagcacacctgtccgaccggcaga
accctctatgacagcgtgcacgctgaactgattaattatctggctgcgccggaaaacagt
gaaggctttgatgactttatcgacgcctgccgtaaacagcatgacgcgctgaaatctcag
cttgaacaaggtcgggatcggttactggagttgaactcgaacggcggcgacgccgcgcag
atgctggcgaataccattgccgagcaggataacgacaccgagctggtcaactttgccctg
aatctgtttgatatcgtgggcatcaatcaggaagatcgtagcgataacctgattgtgctg
acgccgtcagatcatatgttagtcccggatttcccgggcttacctgaagacggttgcacc
atcacgttcaaccgcgatcaggccctgtcgcgtgaagatacccagtttattacctgggaa
catccgctgatccgtaacggcctggatctgatcctgtcgggcgacacgggcagttgtgcg
ctgtcgctgctgaagaataaggcattgcctgtcggcacgctgctggtagaactgatttac
gtggtggaatctcaggcacctaagcatctgcagttaacccgtttcctgccgccaacgcct
ctgcgtttgctgttagatcgcaagggcactaacctggcaggtaaagtggagttcgagagc
ttcaaccgtcagttgaatgcggtcaaccgccatacaggcagtaagctggtgaacgccgtt
cagcaggatgttcacgctattcttaccctggcggaaaaagaagtcgtcagtgaagcaagt
gccataatcgatacggcacggcgcgaagcgagtgaaaagctgggggccgagttatcgcgt
ctggaagccctgaaagccgtcaaccccaatattcgtgacgatgaagttgacgcgctggaa
agcaatcgcgagcaggtgctggaaagtttggatgaagccacctggcgcctggatgcgctg
cgtctgattgtggttacgcatcagtaa
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