Pantoea stewartii subsp. stewartii: DSJ_06540
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Entry
DSJ_06540 CDS
T04970
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pstw
Pantoea stewartii subsp. stewartii
Brite
KEGG Orthology (KO) [BR:
pstw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pstw03016
]
DSJ_06540
Enzymes [BR:
pstw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
DSJ_06540
Transfer RNA biogenesis [BR:
pstw03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
DSJ_06540
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ARF49030
UniProt:
H3R8P9
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All DBs
Position
complement(1354637..1355164)
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AA seq
175 aa
AA seq
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MALQRLFFAIAPPEDLQQQLVQWRADTFSEEAGRPIAAANLHLTLAFLGKVSAETSKQLQ
TLASRIHQPAFDVTLDDAGHWPRPGVVWLGCQRPPRGLLQLASLLRAQAARHGCEQPAQP
FHPHITLLRSATQPVALPPRGFLWRFTASQFSLFASEYVKGRTRYRTLATWPLQS
NT seq
528 nt
NT seq
+upstream
nt +downstream
nt
atggcgttacagcgcttattttttgctattgccccacccgaagacctgcaacagcaactg
gtgcagtggcgagctgataccttcagtgaggaggcaggtcgcccgattgcggccgcgaac
cttcatctgacgctggcttttttgggcaaggtctcagcggagacctcaaaacagctgcaa
accctggcctcgcgcatccatcagcctgcttttgatgtgacgttagatgatgcggggcac
tggccgcgccccggcgtggtctggctgggctgtcagcgtccaccccggggattgctgcag
ctggcaagtctgctgcgcgcccaggccgcccggcacggctgtgagcagcccgctcagcct
tttcatccacacatcaccctgctgcgctcggcgacgcaacctgttgccctgccccctcgc
ggctttctctggcgctttacggccagtcagttttcgctttttgcctcagagtacgtaaaa
gggcggacgcgctaccggacactggccacctggccgttacagtcataa
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