Pantoea stewartii subsp. stewartii: DSJ_14235
Help
Entry
DSJ_14235 CDS
T04970
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pstw
Pantoea stewartii subsp. stewartii
Brite
KEGG Orthology (KO) [BR:
pstw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pstw03019
]
DSJ_14235
Enzymes [BR:
pstw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DSJ_14235
Messenger RNA biogenesis [BR:
pstw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DSJ_14235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
AAA_23
T2SSE
NACHT
PhoH
nSTAND3
HA2_N
AAA_30
ResIII
AAA_25
AAA_16
SLFN-g3_helicase
TsaE
Motif
Other DBs
NCBI-ProteinID:
ARF50374
UniProt:
H3RD17
LinkDB
All DBs
Position
complement(2866611..2870510)
Genome browser
AA seq
1299 aa
AA seq
DB search
MSSPVSSPLTPLWSRLDALMLRDRQRLQRRLHGARKVKNPDAQHGIAAELEQDILAAEQR
VAQRIAATPRITFPDNLPVSQKQQDIADAIRAHQVVIVAGETGSGKTTQLPKICLALGRG
ITGLIGHTQPRRLAARTVANRIAEELETSLGGCVGYKVRFNDQVGETTQIKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKVIITSATIDPQRFSRH
FNNAPVIEVSGRTYPVEVRYRPVVEEADDVERDQLQAIFDAVDELSQEGRGDILIFMSGE
REIRDTADALMKRDLPHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEADFLSR
PAFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRHIQDGVRLLEELGALTLSEE
GHYKLTGSGRQLAQLPVDPRLARMVLAARQYGCVREVMIIAAGLSIQDPRERPAEKKQAS
DEKHRRFADKESDFMAFVNLWNYLGEQQKALSGNVFRRQCKADFLNYLRVREWQDIYTQL
RQVVRELGIPVNSEPAEYREIHCALLTGLLSHIGQKDAEKQEFTGARNARFAIFPGSGLF
KKPPKWTMVAELVETSRLWGRIAARIDPEWIEPLAQHLIKRSYSEPHWEKSQGAVMASEK
VTLYGLPIVAARKVNYGAIDPTLSRELFIRHALVEGDWQTRHAFFRANQKLRSEVEDLEH
KSRRRDILVDDETLFAFYDQRVGKEVVSARHFDSWWKQVSKTTPELLNFDKQMLIKAGAD
TVSQLDYPNVWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVDEAGFEWQIPGVRRE
LIIALIKSLPKPLRRHLVPAPNYAEAFLGRVTAMEMPLLDALSREFRRMTGVTLERDDWQ
WEQVPDHLKMTFRVVDEHNRKLQEGKDLAALKVLLKGKVQETLSNVADDGLEQRGLHLWC
FGDLPRSYEQKRGNYQVKAWPALVDEKDSVAIRLFDSEHEQQKMMWRGQRRLLLLNIPSP
VKYLHEKLPNKAKLGLYFNPYGKVMELIDDCIACGIDKLIAEAGGPAWEQAAFDALCEKV
RAELNDTVVEIAKQVEQILTAVFNINKRLKGRVDMTLALALADIKAQMNGLVYRGFVTQN
GWQHLADTLRYLHGIERRLEKLPVDPHSDRARMLRVQAVEQAWQAWRNKLPPQRQDDEDV
LHIRWMLEELRISLFAQQLGTPYPISDKRIMQAMEQITA
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctccggtttcatctcccttaacgccgctttggtcgcggcttgatgccctgatg
ctgcgcgaccggcagcggctgcaacgccggttgcacggtgccagaaaagtgaaaaatcct
gatgcccaacacggtattgccgccgaactggagcaggatattctcgcggctgagcagcgc
gtggcccagcgtattgccgccacaccgcgcatcacgttcccggataatcttccggtcagt
cagaaacagcaggatatcgcggatgcgattcgcgctcatcaggtcgtgatcgtggcaggt
gaaaccggctcgggaaaaaccacccagttgcccaaaatttgcctggcgctgggacgcggt
atcaccggtttaattggccatacgcaacctcgtcgtcttgcggcgcgcaccgtcgcgaac
cgcattgccgaagagctggaaacgtcgctgggcggctgcgtcggctacaaagtgcgcttt
aatgatcaggtcggtgaaaccacgcagattaagctgatgaccgacgggattctgctggcg
gagatccagcaggatcgcctgttgatgcagtatgacaccatcatcatcgatgaagcgcac
gaacgcagcctgaatatcgacttcctgctgggctatttgcgtgagctgctgccgcgccgt
ccggatcttaaagtcattatcacctcggcgactatcgatccgcagcgcttctcccgccac
tttaacaacgcgccggtgattgaagtatcgggccggacttatccggtggaagtccgttat
cgtccggtcgtcgaagaggcggacgatgtggaacgcgatcagcttcaggcgatctttgat
gcggttgatgagctgagccaggagggccggggcgatattctgatcttcatgagcggcgag
cgggagattcgcgataccgccgatgcgctgatgaagcgcgatttgccgcataccgaagtg
ctgccgctgtatgcgcgtctgtcgaacagtgagcaaaatcgggtatttcagtcacacagc
gggcgacgtatcgtgctggcgacgaacgttgccgaaacctcgctcaccgtgccgggcatc
aagtacgtcatcgatccgggcacggcgcgcatcagccgctacagctaccgcaccaaagtt
cagcgtctgccgatagagcccatttctcaggcttccgcgaatcagcgtaaaggacgttgc
ggccgcgtatcggaagggatctgtatccggttgtattctgaagcggatttcctgagccgt
ccggcctttaccgatcccgaaattctgcgcaccaatctggcctcagtcattctgcagatg
accgcgctgggactgggcgatattgcggcattcccgtttgtggaagcgccggataaacgc
catattcaggacggcgtcagattgctggaggagctgggcgcgctgaccctgagcgaagaa
ggccattataaactcaccggctcgggccgccagctggcgcaactgccggtggatccgcgc
ctggcacgcatggtgctggctgcccggcagtacggctgtgtgcgcgaagtgatgattatc
gcggcaggtttgtcgatacaggatccgcgcgaacgcccggcagaaaagaagcaggcctcc
gatgaaaaacaccggcgttttgctgacaaagagtctgattttatggcctttgttaacctg
tggaactacctgggcgagcagcaaaaagcgctgtccggcaatgtcttccgtcgccagtgt
aaagccgatttccttaactacctgcgcgtacgggaatggcaggatatctatacccaactg
cgtcaggtggtccgtgagcttggtattccggtgaacagcgaaccggcggagtatcgcgag
atccactgtgcgttactgaccggtttactgtcgcatatcggccagaaagatgcggaaaag
caggagtttaccggtgcacgcaatgcgcgctttgccatttttccgggctcaggtttattc
aaaaaaccgcccaagtggacaatggtggcggagctggtggaaaccagccgactctggggc
cgtattgccgcgcgtatcgatccggaatggatagaaccgctggcacagcatctgatcaaa
cgtagctacagtgaaccgcactgggagaaatcgcagggcgccgtcatggccagtgagaaa
gtcaccttgtacggcttgccgattgtggccgcgcgcaaggtcaactatggcgcgatcgat
cctacgctgagtcgcgaattgtttattcgccacgcgctggtggaaggcgactggcaaacg
cgccacgcatttttccgtgctaatcagaagctgcgcagtgaagtggaagacctggaacat
aaatcgcgtcgccgcgacattctggtagatgacgaaaccttgtttgccttttacgaccaa
cgtgtagggaaagaggtggtttccgcacgccactttgacagctggtggaaacaggtcagc
aaaaccaccccggaactgctcaattttgataagcagatgctgatcaaagcgggcgccgat
acggtcagccagctcgactatcccaatgtctggcatcagggcaatctcaaactcagattg
agttatcagtttgaacctggtgcggatgcagatggcgtgacggtccatattccgcttccg
ctgctgaaccaggtcgatgaagccggctttgagtggcagattcccggtgtacggcgtgaa
ctgattattgcgctgattaaatcgttaccgaagccgctgcgtcgtcatctggtgcccgcg
ccaaactatgccgaggcgtttttaggccgcgtgaccgcaatggaaatgccgctgcttgat
gccctgtcgcgcgagttccgccggatgacgggcgtgacgctggagcgggacgactggcaa
tgggaacaggtgcccgatcatctgaaaatgaccttccgggtggtagacgaacacaaccgt
aagctgcaggaaggtaaagatctcgcggcgctgaaagtgctgcttaaaggcaaggtgcag
gaaacgctgtccaacgtggcagatgatggtctggaacagcgcggtttacacctctggtgc
tttggcgatttgcctcgcagctacgagcaaaaacgcggcaactaccaggtaaaagcctgg
cccgcgctggtcgatgagaaagacagtgtggccatccggttattcgacagtgagcatgag
cagcagaaaatgatgtggcgcggtcagcgtcggttgctgttgctgaatattccgtcgccg
gtgaaatatctgcacgaaaaattgccgaacaaagccaagctgggcctctatttcaatccc
tatggcaaagtgatggagctgatcgatgactgtattgcctgcggtatcgataagctgatt
gccgaggcgggtggaccggcctgggaacaggcggcctttgatgcgctgtgcgagaaggtc
cgcgccgagctgaatgataccgtggtggagatagcaaagcaggttgagcagattctgacg
gcggtcttcaatatcaataagcgccttaaaggtcgggttgatatgacactggcactggcg
ctggccgatattaaggcgcagatgaatgggctggtgtaccggggatttgtgacccaaaat
ggctggcagcatctggcagataccttacgttatctgcacggtattgagcgtcggctggaa
aaattgccggttgatccccacagcgaccgcgcccgtatgctccgggttcaggccgttgaa
caggcctggcaggcctggcgcaacaaactgccgccgcagcgtcaggatgatgaggatgtg
ctgcatattcgctggatgctggaagaactccgcatcagtctgttcgcacagcagcttggc
acgccttatcccatttcagataagcgcatcatgcaggcgatggagcagatcaccgcctga
DBGET
integrated database retrieval system
