Pantoea stewartii subsp. stewartii: DSJ_14420
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Entry
DSJ_14420 CDS
T04970
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pstw
Pantoea stewartii subsp. stewartii
Brite
KEGG Orthology (KO) [BR:
pstw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pstw03016
]
DSJ_14420
Enzymes [BR:
pstw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DSJ_14420
Transfer RNA biogenesis [BR:
pstw03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DSJ_14420
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
PilZ
S1CSD-TOTE-2
ODP
Motif
Other DBs
NCBI-ProteinID:
ARF50408
UniProt:
H3RD55
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All DBs
Position
2908385..2910316
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AA seq
643 aa
AA seq
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MFQDNPLLAQLKEKLHSQTPRAEGVVKGTEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
IAVIHTDKDRESAEPETLVEPFLSRFVGRVQKKDDRLSIVPDHPLLKEAIQCRPVRGLTH
DFQQGDWAVAEMRRHPLKGDRGFYAELTEFIVSADDHLAPWWVTLSRHNLERQAPEMGFG
EMLDENLQREDLTALDFVTIDSASTEDMDDALYVEALEDNALRLTVAIADPTAYVAEGSE
LDKLAAQRAFTNYLPGFNIPMLPRELSDDVCSLRPDVRRPVLACRVTVAQDGSLSDVHFF
AAWIESKAKLVYDEVSDWLENSGEWQPQNDAIANQIRLLHQLCLSRGEWRQAHELVFKDR
PAYRFLLGEKGEVLDIVAEPRRIANRIVEEAMILANICAAEVLRDKLGFGIYNVHAGFDS
ANAEQAAAVLATHGITADPSAITTLDGFRVLRRELDAQPTQFLDSRIRRFQTYAEITTEP
GPHFGLGLEAYATWTSPIRKFGDMINHRLLKAIVRGESIARPDDAVTVTMSERRRLNRMA
ERDVGDWLYARYLSPFAATDRKFSAEIIDISRGGMRVRLLENGAVAFIPAPFLHSVRDEL
VCSQESGTVQIKGEVVYRVTDVIDVTIAEVRMETRSVVARPAA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgttccaggataatccgctgcttgcgcagcttaaagagaagctccattcacaaacgccg
cgtgcagaaggcgttgtaaaaggcaccgaaaagggattcggctttctggaagtcgatgca
caaaaaagttatttcatcccgcccccgcagatgaagaaagtgatgcacggcgaccgtatt
attgccgtcatccacaccgataaagatcgtgaaagcgcagaaccagaaacgctggtcgag
cctttcctgagccgttttgtaggccgtgtgcagaaaaaagacgatcgtctttctatcgtg
cccgatcatcccctgctgaaagaggccattcagtgccgtccggtacgtgggctgacccac
gatttccaacagggcgactgggccgtcgcggaaatgcgacgtcatccgttaaagggtgac
cgcggcttttatgccgaactgaccgaatttattgtcagcgcagacgaccatcttgcgccg
tggtgggtgacactgtcacgtcacaatctggagcgccaggcccctgaaatgggttttggc
gagatgctggacgaaaacctgcagcgtgaagacctgaccgcgctggatttcgtgaccatc
gacagcgccagcacagaagatatggacgatgcgctctatgttgaggcgctggaagacaat
gccctgcgcctgacggtcgccattgccgatccgaccgcctacgtggctgaaggcagcgag
ctggataagctggccgcgcaacgtgcgttcaccaactacctgccgggctttaatattccg
atgctgccgcgcgagctttccgatgatgtctgctccctgcgccctgatgtgcgtcgcccg
gtactggcctgtcgcgtcaccgtggcgcaggacggcagcctgtctgatgtgcacttcttc
gcggcctggatcgaatcgaaagccaaactggtttacgacgaggtttctgactggctggag
aacagcggcgagtggcagccgcagaatgacgcgattgcgaatcagatccgcctgctgcat
caattgtgcctgtctcgcggcgaatggcgccaggcccatgagctggtgtttaaagatcgc
ccggcttaccgcttcctgttgggcgagaaaggcgaagtgctggatatcgtcgctgaaccg
cgtcgcattgccaaccgaatcgttgaagaagccatgattctggccaacatctgtgcggcc
gaggtgctgcgcgataagctgggctttgggatctataacgtccatgcaggcttcgatagt
gccaacgccgagcaggccgccgccgtgctggcgacacatgggattacggcagatccttca
gcgattaccacgctggacggtttccgtgtgctgcgccgggagctggatgcccagccgacc
cagttcctggacagccgtattcgtcgtttccagacgtatgcggaaatcaccaccgaacct
ggcccgcacttcggtctgggcctggaagcctatgcgacctggacctcaccgattcgtaaa
tttggcgacatgatcaaccatcgcctgctgaaagccatcgtgcgtggtgagtcgatcgcc
cggcccgatgacgctgtcacggtcaccatgagcgagcgccgccgtcttaaccgcatggcc
gagcgtgacgtgggcgactggctttatgcccgttacctgtcaccttttgcggcgacagat
cgtaaattcagcgcggaaattatcgatatttcccgtggtggcatgcgcgtgcgtttgctg
gagaatggcgcagtggcgtttatccctgctccgttcctgcactccgttcgtgacgaactt
gtgtgcagccaggaaagcggcacagtgcagatcaaaggtgaagtggtttaccgcgtgacc
gatgtgatcgacgtgaccatcgccgaagtgcgtatggaaacccgcagcgtcgtcgctcgc
cccgcagcctga
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