Pantoea stewartii subsp. stewartii: DSJ_21765
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Entry
DSJ_21765 CDS
T04970
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
pstw
Pantoea stewartii subsp. stewartii
Brite
KEGG Orthology (KO) [BR:
pstw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pstw03019
]
DSJ_21765
Messenger RNA biogenesis [BR:
pstw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DSJ_21765
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Motif
Other DBs
NCBI-ProteinID:
ARF51667
UniProt:
H3RHK4
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All DBs
Position
complement(4366962..4368911)
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AA seq
649 aa
AA seq
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MRLTTKLSAFITLISVLAMVLMLVGCAFSVFWLTHQRVESRVQVLATEVDNVLLSQPPDA
LKAWLAPMLPVINAEQLSLYNGRQPVFTLSRHENQMLEHEKNRYIHFDIALMHQPGMRLQ
LTILDPAQTWLRSIPATYTLVALVLVVLIMAVMLSIIHRWLVRQWRGMEHLESRSASILA
GERTFFRQKQRDEWPPKASRAIDQLLSDLQEAGEQRVRIDTLIRTFAAHDGRTGLNNRLF
FDNQLATLLEDQEDVGTHGVVMMIRFPELDTHDHSLGPVLVEEYLFNVVNMLSTFVMRYP
GALLARYFRSDFAVLLPHRSLKEANSIADQLINAVDALPPMRMVNRDDFIHIGISAWHSG
QTVPQVMENVEMATRRATLSGGNNWSNGAGNPQDAGRGSVRWRTLLENTLSRGGPRLYQK
PAVDREGKVRHRVILSRIFDGDKEVLSAEYMPLVQQLGMVESWDRQMVLRIAALSELWPE
ETLVIPVSIDSLLKRPFVVWLQRMLLACPKSQRKRFLFELAEGDVCQHISRLIPVLHSLQ
AFGCRIAISQAGLTVVSSAYIRQLPVALIKLDAGLVRNIERRTENQLFVRSLLDVCKPTG
TRLYAAGVRTKAEWQTLVELGVEGGQGDLFSPSQPVNSNVKKYSQRYQI
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgaccaaactttctgcatttattacactgattagcgtactggcaatggtt
ttaatgctggtgggttgtgcttttagtgttttctggctcacgcatcagcgcgtcgaaagt
cgcgtacaggtgctggcgaccgaagttgataacgtcttgctgagccagcctcccgatgcg
ctcaaggcctggctggccccgatgttgcctgttattaacgcggagcaactttctctctat
aacggtcgccaacctgtttttacgctgtcccgccatgaaaatcagatgctcgagcacgaa
aaaaaccgctatatccattttgacattgcgctaatgcaccaaccgggaatgcggctccag
ttgacgattctcgatcctgcacaaacctggctacgctcgattcctgcgacttataccctt
gtcgccctcgtgctggttgtactgattatggcggtgatgctgtccatcatccatcgctgg
ctggtgcgtcaatggcgcgggatggaacacctggaaagtcgttcggcatcgattcttgct
ggcgagcgtaccttcttccgccaaaagcagcgtgatgagtggccgcccaaagccagtcgg
gcgatcgatcagcttctgtcagatttacaggaagccggcgagcagcgcgttcgcattgat
acgttaattcgtacctttgctgcgcatgatggccgaaccgggctgaataaccggcttttc
ttcgataatcagttggccaccttgctggaggaccaggaagatgtcgggacacacggcgtg
gtcatgatgatccgctttcctgagctcgacacgcacgatcactcgcttggaccggtgctg
gttgaagagtacctgtttaacgtcgtcaatatgctgtccacttttgtcatgcgttatccc
ggcgcgcttcttgcgcgttattttcgcagtgattttgcggtattgctgccgcaccgcagc
ctgaaagaggccaacagcatcgctgaccagttaattaatgccgttgatgcgttaccccct
atgcgcatggtgaaccgtgacgactttattcacattggtatcagcgcctggcacagtggc
cagacggtgccgcaggtaatggaaaatgtggagatggcgacgcgacgggcaacgctgtcc
ggtggcaataactggtcaaacggtgcgggcaatccgcaggatgccgggcgcggcagtgtt
cgctggcgcactttgctggaaaatacactcagtcgcggtgggccgcggctctatcagaaa
cctgccgtggaccgtgagggcaaggttcgtcatcgagtcatactcagccgcatctttgat
ggtgataaagaagtgctgtcggctgaatacatgccactggtgcagcagcttggcatggta
gagagctgggacaggcagatggtgttgcgcattgccgctttgtcagagctgtggcctgaa
gaaacactggttatcccggtcagtatcgactctctgttaaagcgtccctttgtcgtctgg
ttgcagcgaatgttgctggcctgcccaaaaagtcagcgaaaacgatttttatttgaactt
gcggaaggggatgtttgtcaacacatcagccgtttgattccggtgttgcattcgctccag
gcatttggctgccggattgccatcagtcaggcaggattgacggtagtcagtagcgcctat
atcaggcaactgccggtcgcgttaatcaagctggatgccggcctggtgcgcaacattgag
cgccgtactgaaaatcagctgtttgtgcggagcttgctggacgtctgcaagccgaccggt
acccggctttatgcggcaggcgttcgcacaaaagcggagtggcaaactctggtcgaatta
ggcgttgaaggcgggcagggcgacctgttttcaccttctcagccggtcaacagtaatgtg
aaaaagtactcgcaacgttaccagatttaa
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