Pedobacter steynii: BFS30_05955
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Entry
BFS30_05955 CDS
T04469
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psty
Pedobacter steynii
Brite
KEGG Orthology (KO) [BR:
psty00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psty03016
]
BFS30_05955
Enzymes [BR:
psty01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BFS30_05955
Transfer RNA biogenesis [BR:
psty03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BFS30_05955
Prokaryotic type
tRNA splicing ligases
BFS30_05955
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
CM1
Motif
Other DBs
NCBI-ProteinID:
AOM76745
UniProt:
A0A1D7QDQ2
LinkDB
All DBs
Position
complement(1464530..1465930)
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AA seq
466 aa
AA seq
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MSILKTKELSKIGYINDKARSLVINTMAKNFKHHTKNQIIELLINIKNTPENYVEDEHLG
KIAETFMDKVKEVNFQSYHLLQQSGMLKTYGSKEIEHGAKKQMELAMSLPVVTQGALMPD
AHSGYGLPIGGVLATDNAVIPYAVGVDIGCRMALSIIDEGDGFFKRYSHQMKVALRELTH
FGMEGSLDIQPEHDILDSPVFKETELLKKLHGKAFRQLGTSGSGNHFVEFGEIELYENNT
LGLPAKKYMALLSHSGSRGLGANVAMYYTKIAMDVCRLPKEAKSLAWLDMNTEAGQEYWL
SMNLAGDYARACHDVIHASLLKSLGLQALAKVENHHNFAWKDQLANGKEVIIHRKGATPA
HQGELGIIPGSMATAAYLVMGKGIENSLHSAAHGAGRAMSRQKAKNNTTASALKKMLATA
GVTLIGGSVEENPLAYKDIERVMHAQRDLIEVHGKFFPKIVRMNRD
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgagcattttaaaaacaaaagaacttagtaaaataggttatatcaatgataaagcaaga
agtctggtgatcaatacgatggctaaaaatttcaagcatcatactaaaaatcagatcata
gaattattaatcaatattaaaaacacaccagagaattatgtagaagacgaacacctcggc
aagattgccgaaacatttatggataaggtaaaggaagtgaatttccaatcttaccatctg
ttacagcaaagtggaatgctgaagacgtatggcagcaaagagatagagcatggtgcaaag
aaacaaatggaactcgccatgtcacttcctgttgttactcagggcgctttaatgccagat
gcccatagcggctatggcttacccattggaggtgtcctggcaacagataatgcggttatt
ccttatgctgttggtgtagatatcggttgtagaatggccctgagcattatagatgaaggt
gatggtttttttaagcgttatagtcaccagatgaaagtggctttaagagaactcacccat
tttggaatggagggctcattagacatacagccggagcatgacattcttgacagcccggtt
tttaaagaaacagaactgctgaagaaacttcatggcaaagcattcagacaactgggtact
tccgggagcggcaatcactttgtagaatttggcgaaatagaactctatgaaaacaatacg
ctgggtttaccggcaaagaagtatatggccttactttcgcattcaggaagccgcggctta
ggggctaatgtagcgatgtattacaccaaaatagccatggatgtctgcaggttaccaaaa
gaggcaaagagcctggcctggctggatatgaataccgaagctggtcaggaatactggtta
agtatgaaccttgcaggtgattatgccagggcctgtcatgatgtgatccatgccagtctg
ctgaaatccctgggtttacaagcgcttgcgaaagtggaaaaccaccataatttcgcctgg
aaagatcagttagctaatggaaaagaggtcattattcaccgtaaaggtgccacgcctgca
catcagggagaactgggcattattccgggaagtatggctaccgcagcttatctggtaatg
ggtaaagggattgaaaattcattacactctgctgcacatggtgccggaagggcaatgagc
agacaaaaagcaaagaacaacaccacagcctctgctttgaaaaaaatgctggccaccgcc
ggcgtaaccttaattggtggaagtgtagaggaaaatccattggcctataaagacatcgaa
agggtaatgcatgcccagagagacctgattgaggtacatggaaagttctttcctaagatt
gtccggatgaacagagattaa
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