Pedobacter steynii: BFS30_07815
Help
Entry
BFS30_07815 CDS
T04469
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
psty
Pedobacter steynii
Pathway
psty03410
Base excision repair
psty03430
Mismatch repair
psty03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BFS30_07815
03430 Mismatch repair
BFS30_07815
03440 Homologous recombination
BFS30_07815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psty03400
]
BFS30_07815
DNA repair and recombination proteins [BR:
psty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BFS30_07815
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BFS30_07815
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BFS30_07815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AOM80688
UniProt:
A0A1D7QPV8
LinkDB
All DBs
Position
complement(1897895..1899592)
Genome browser
AA seq
565 aa
AA seq
DB search
MEKRWVQAVKGNKETTDLLAQQLNIDQSLAQILVQRGISSFEEAKDFFRPQMAQLHDPFL
MKDMDKAISRIELALSNHEKILVYGDYDVDGTTSVALTYSFFSQFTENIEYYIPDRHKEG
YGISTQGIDYAHKNGQSLIIALDCGIKSVDKVAYANTLGIDFIICDHHLPGDELPAAAAL
LDPKRADCPYPFKELAGCGIGFKLAQAYCLQHQLPAEKYEQYLDLVMVSIAADIVPVEDE
NRILAYHGLVKLNRNPCMGLKALMDISGRNKDYTLTDVVFVLAPRINAAGRMDHANEAVK
MLLCEEDSLALSQSEFINQQNTERKTSDQNITAEALALIADCDILIHKKTTVVYHESWNK
GVIGIVASRLTEKYYRPTIVLTESNGLLTGSARSVAGFDLYEALVGCEDLLVQFGGHKFA
AGLTMKPENIDAFSDRFEQIVAATITEDLLCPEIKIDTEIQFAQIDGKFQRIISQMAPFG
PHNPAPIFVTHGVTLATKPYVVATKHLKLNIKQQNSVIFESIGFGLAEFETLLQFDQPFS
ICYTIEENIWKEQRRLQLNIKGIKI
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaagatgggtgcaagctgtaaaggggaataaggaaacaacagatttgcttgca
cagcaattaaatatagaccagagtttagcacagatattagtacagcggggcatttcttct
tttgaagaagccaaagattttttcaggcctcagatggcacaattgcatgatcctttcctg
atgaaagacatggataaggccatcagcaggattgaactggccctcagtaatcatgaaaaa
atactggtctacggtgattacgatgtggatgggacaacatctgttgccctgacatatagc
tttttcagccagtttacagaaaacattgaatattacattccagacagacacaaggaggga
tatggcatctctacccaggggattgattacgcccataaaaatggacagagcctgattata
gccctggattgtgggataaaatctgtagataaagtcgcctatgccaacacgcttggtata
gatttcatcatatgcgaccaccatcttccaggagatgaactgcctgcagcggcagcatta
ctggatcctaaacgggccgactgcccctacccttttaaagaactggcgggatgcggaata
ggatttaagcttgcccaggcctattgcctgcaacatcagcttcccgcagaaaaatacgaa
cagtacctggacctggttatggttagcattgcagcggatattgttcctgtagaagatgaa
aacagaatattagcttatcatggcctggttaaattaaaccgtaatccctgtatgggctta
aaggccctgatggacatttccgggcggaacaaagattatacacttacggatgtcgtcttc
gtattggcaccaagaattaatgccgcaggccggatggaccatgccaatgaagcggttaaa
atgctgctttgtgaggaagacagtctggcactgtcccaaagtgaattcatcaatcaacaa
aatacagaacgtaaaacttcagaccagaacattacggcagaagctcttgctttgattgca
gattgcgatatactgatccataaaaagacaacagttgtttatcatgaaagctggaataaa
ggcgtaatcggaattgtggcttcccgcctgaccgaaaaatattaccggccaaccattgtt
ctgaccgaatcgaacggtctgctgaccggatctgcccgttctgtggcggggtttgacctg
tatgaggctttagttggctgcgaagatctgctggtacaatttggcgggcataaatttgcg
gccgggctgaccatgaagccggaaaatattgacgctttttcagaccggtttgaacaaatt
gttgctgcgaccattactgaggacctgctatgccctgaaatcaagatagatacagagatt
caattcgcgcagattgacggtaaatttcaacgcatcatttcacagatggcccccttcggg
ccgcataatccagcacctatttttgtgactcatggggtaactctggcaacaaagccttat
gttgtggcgacaaaacatttaaaattgaacataaaacaacaaaattcagttatttttgaa
agcattggatttggattagcagaatttgaaacactgttacaattcgaccaacctttttct
atttgttatacgatagaggaaaatatctggaaagaacagagacgtttgcagttgaatatt
aaagggattaagatataa
DBGET
integrated database retrieval system
