Pedobacter steynii: BFS30_10885
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Entry
BFS30_10885 CDS
T04469
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psty
Pedobacter steynii
Pathway
psty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFS30_10885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psty03019
]
BFS30_10885
Enzymes [BR:
psty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BFS30_10885
Messenger RNA biogenesis [BR:
psty03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BFS30_10885
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
CMS1
Flavi_DEAD
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AOM77627
UniProt:
A0A1D7QG51
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All DBs
Position
complement(2626291..2627541)
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AA seq
416 aa
AA seq
DB search
MDFKDFNFNPDLLEGLLAMGFRNATPIQQEAIPLILNKKDLIACAQTGTGKTGAYLLPIM
NMISQTEERHNNTLILAPTRELAQQIDLQVEALSYFTNISSLTVYGGGDGIAYEQQKRSM
REGVDIIIATPGRLISHLSSGLLKLDQLQHLVLDEADRMLDMGFYDDIMRIVSFLPQKRQ
TVLFSATMPPKIRTLAGRLLQHPEEISIAISKPAAGINQQAYLVHDAQKVKLLTELMKNV
DFPSILIFASTKEKVKNLGKVFRGLGFKAEAFHSDLGQKEREAILSEFKNKRVPVLIGTD
VLSRGIDVEGISLVINFDVPHDPEDYIHRIGRTARAATTGTAITLVNDKDKRKFASIEKL
IDRKIDRMPLPEHLGEAPADTPTSPSTEKKYDKKKPQRKFWKKKPKAAGAPGPGKE
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
ttggatttcaaagattttaattttaacccggacttactagaagggttattagcgatgggt
tttcgcaatgccacccccatccagcaagaagctatcccgcttattctaaataaaaaagat
ttaattgcctgcgcacaaacaggtaccgggaaaaccggcgcttacctgttgccgatcatg
aatatgatcagccagacagaggaacgtcataataataccctgatactagctccaacccgg
gaacttgcacagcagattgatttacaggtagaagcactttcttatttcaccaatatcagt
tccttaacggtatatggtggtggagacggtatcgcctatgagcagcaaaagcgttccatg
cgtgaaggtgtagacatcattattgccactccgggacgattaatatcccatctttcttca
ggcctgctgaaactggatcaactccagcatttggtattggatgaggcagacaggatgttg
gacatggggttttatgatgacattatgcgtattgtgagcttccttccacagaaaagacaa
acggtgttgttttctgcaaccatgccaccaaaaataagaacccttgcaggcaggttactt
cagcatcctgaagagatcagcattgccatttctaaaccggcagcaggaattaaccagcaa
gcctatcttgttcatgatgcccagaaggtaaaactactaactgagctaatgaaaaatgta
gacttcccaagtattctgatttttgcttccaccaaagaaaaagtaaaaaatctgggtaag
gtttttcgtggattaggattcaaagcagaggctttccattccgacctgggacaaaaagag
cgcgaggcgattttatctgaattcaaaaataaaagagttcctgtcctgatcggaacagat
gtactttccagaggaattgatgtggagggtattagtctggttatcaattttgatgtgcct
catgatccggaagactatattcaccggattggtaggacagccagagcggcaacaaccggt
accgcgattaccctggtaaatgataaggacaaacgaaaattcgcgagcattgaaaaactg
attgacagaaaaatcgacagaatgccgcttcctgaacatcttggagaagcacctgccgat
acgccaaccagcccttccacagaaaaaaaatacgataaaaagaaaccacagcgtaaattc
tggaagaaaaagccgaaagctgccggagctccgggtcctggaaaagaataa
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