Pedobacter steynii: BFS30_16175
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Entry
BFS30_16175 CDS
T04469
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psty
Pedobacter steynii
Pathway
psty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFS30_16175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psty03021
]
BFS30_16175
03019 Messenger RNA biogenesis [BR:
psty03019
]
BFS30_16175
Transcription machinery [BR:
psty03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BFS30_16175
Messenger RNA biogenesis [BR:
psty03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BFS30_16175
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
ATPase_2
OB_RNB
AAA_22
Mor
Motif
Other DBs
NCBI-ProteinID:
AOM78581
UniProt:
A0A1D7QIU1
LinkDB
All DBs
Position
complement(3875886..3877562)
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AA seq
558 aa
AA seq
DB search
MFNKTELNEKLTAELREIAKTQGILNADELRKAELVEIIAQITEQQQAAESVEGEAPVKA
TKTKTVKENTAEKPTRKRIRITPKEEEESKNNNFNRTSLFDDEPVQASPVKEEKKISAQS
KVVAPPSEAAAEVISEVKEEAVAAPPVQEMKKHRPARDENNRAPKNPNNINNNGNQKQNE
NSYSNLDFDNTITNEGVLEIMPDGYGFLRSADYNYLSSPDDIYVSQSQIKLFGLKTGDTV
KGSIRPPKEGEKYFPLVRVETINGRLPADVRDRVPFDYLTPLFPTERLNLYTESNNYSTR
IIDLFTPIGKGQRGLIVAQPKTGKTNLLKEVANAIAKNHPEVYLIILLIDERPEEVTDMA
RSVRAEVIASTFDEPAERHVKIANIVLEKAKRLVECGHDVVILLDSITRLARAYNTTAPA
SGKILSGGVDANALHKPKRFFGAARNIERGGSLTILATALTDTGSKMDEVIFEEFKGTGN
MELQLDRKLSNKRIFPAIDITASSTRRDDLLHDRDTLQRVWILRNHLADMNAQEAMEFVQ
QQIRNTKTNEEFLISMNS
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtttaataaaacagaattaaatgaaaagctcaccgccgagttgcgtgagattgctaaa
acccagggtatcctaaatgccgatgagttgcgtaaagccgaactagttgaaattatcgca
caaatcacagaacagcaacaagctgcggaatcggttgaaggtgaagcacctgttaaagcg
acaaaaacaaaaactgtaaaagaaaatactgctgaaaaaccaaccagaaaaaggatcaga
ataacgcctaaagaggaagaagaaagcaagaataataactttaacaggacatccttattt
gacgatgagcctgttcaggccagtccggttaaagaagagaaaaaaatatcagctcagtca
aaagtggtggctccaccttcggaagctgctgcagaagttatttctgaagtgaaagaagaa
gctgttgcagcacctcctgttcaggaaatgaaaaaacaccgtcccgcaagagacgaaaac
aacagggctccaaaaaatcctaataacattaataataacggaaatcagaaacagaacgag
aatagctattcaaatctggatttcgacaataccattactaacgaaggggtattagagatt
atgcctgatggatatggctttttaagatctgcagattataattacctatcttcaccagat
gatatttatgtatcacaatcacaaatcaaactctttggtttgaaaacaggtgatacagta
aaaggaagtatccgtcctccaaaagagggagaaaaatattttccattggtaagagtggaa
accattaacggacgtttacctgctgatgtaagggaccgtgttccttttgattatctgacc
cctctctttcctacagaaagattgaatctttatacagaaagtaataattattctacccgc
atcattgacttatttacgccaataggtaaaggacaacgtgggttaatcgtggctcaacct
aagacaggtaagaccaatctattaaaagaggtagcgaatgccattgcgaaaaaccatcct
gaagtttacctgatcattctattgattgatgagcgtcctgaggaggtaacagatatggca
agaagcgtaagagctgaagttattgcctctacatttgatgaaccggcagaaagacatgtt
aaaattgcaaatattgtacttgaaaaagcaaaacgcctggtagaatgcggtcatgatgta
gtgattcttctggattcgatcacaagattagccagggcgtacaatacgactgcccctgct
tcaggaaagatcctgtcaggtggtgtggatgcaaatgctttacataaacctaaacgtttc
ttcggtgcggcacgtaatattgaaagaggtggctcattaaccattcttgcaactgcctta
acagacaccggctctaaaatggacgaggttatctttgaagaatttaaaggtaccggtaac
atggagcttcaactggatcgtaagttatctaacaaacgtattttccctgcaattgacatt
actgcttcaagtaccagaagagatgatttactgcacgacagagacacgttacaacgtgtt
tggatcctgcgtaaccaccttgcagatatgaacgcacaggaagccatggagtttgtacag
cagcagatcagaaatacaaagacaaatgaagagttcctgatttccatgaatagctaa
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