KEGG   Pedobacter steynii: BFS30_24570
Entry
BFS30_24570       CDS       T04469                                 
Name
(GenBank) RNA polymerase subunit sigma-70
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
psty  Pedobacter steynii
Pathway
psty02020  Two-component system
Brite
KEGG Orthology (KO) [BR:psty00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    BFS30_24570
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psty03021]
    BFS30_24570
Transcription machinery [BR:psty03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BFS30_24570
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r4 Sigma70_r2 GerE HTH_24 Sigma70_ECF UPF0122 HTH_11 PF0610-like_N HTH_40 HTH_23 HTH_10 PH0730-like_N HTH_28 Sigma70_r3 HTH_20
Other DBs
NCBI-ProteinID: AOM80056
UniProt: A0A1D7QN21
LinkDB
Position
complement(5936280..5936858)
AA seq 192 aa
MNQISATDDTVLLDLMRKGDQQAFAILYNRYKGVLFTHAYRKLRDWEEVKDIVQEIFSGL
WAKRETLEITDNLNAYLFKAVRYKIINLIARKNTASIYVDSFQSFLTTYADNTDHLVREK
MLCSIIDAEINNLPPKMRHVFELSRKENLSHKEIAEQLNITEQSVRSHVKNALHILRLKL
GMFLFVALLLNK
NT seq 579 nt   +upstreamnt  +downstreamnt
atgaaccaaataagtgccaccgatgataccgtgctcctggacctcatgcgtaaaggggat
cagcaggcttttgctatactgtataacaggtacaaaggggttttatttacccatgcctat
cgaaagcttagggattgggaagaagtaaaagacattgttcaggaaatattctcaggtctg
tgggcaaaacgggagactttggaaatcaccgataatctcaatgcctacttgtttaaggca
gtgcgctataagatcatcaatttgatcgcccgcaaaaacacagcttctatttacgtcgat
agttttcagtccttcctcacgacttatgctgacaataccgatcacctggtccgggaaaaa
atgctatgttcaataatagacgcggaaataaacaacctgccaccgaagatgcgccatgtc
tttgagctaagcaggaaagaaaacttaagtcataaagaaatcgccgagcagctaaatatt
acagaacaaagtgtacgctctcacgtaaagaatgcgctccatatccttcgcttaaaactg
ggcatgttcctttttgtggccctgcttttaaataaataa

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