Pseudoxanthomonas suwonensis 11-1: Psesu_1711
Help
Entry
Psesu_1711 CDS
T01403
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psu
Pseudoxanthomonas suwonensis 11-1
Pathway
psu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psesu_1711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psu03019
]
Psesu_1711
03009 Ribosome biogenesis [BR:
psu03009
]
Psesu_1711
Enzymes [BR:
psu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Psesu_1711
Messenger RNA biogenesis [BR:
psu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Psesu_1711
Ribosome biogenesis [BR:
psu03009
]
Prokaryotic type
rRNA processing factors
Psesu_1711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
ADV27553
UniProt:
E6WTQ4
LinkDB
All DBs
Position
1887911..1891180
Genome browser
AA seq
1089 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEY
GAERHGFLPLKEISRDYFQAGVDPNKAGIRELLREGQEVVVQVDKDERGNKGAALTTFIS
LAGRYMVLMPNSPTPGGVSRRIEGEDRAELKRAMDALNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLAAWRAVAEAALSKPAPFLIYQESRLIIRALRDYLRADIGEILVDTEEMYNDAR
QFMEQVMPQSLRKLKHYTDDIPLFNRFQIESQIENAYERTVRLPSGGALVIDQTEALTAI
DVNSARATKGGDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMSSSKHQRAVEDR
LQNALKYDRARVQIGRISRFGLLEMSRQRLRASLGESSQIVCPRCEGHGRMRSIESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANFLLNEKRGALREIEQRHDAPIIIVADEQLQTPH
YEVTRLRENELGEESNRPSYQRGTPRKLPVHALTKAQLNIPPPPAVTRVAPPRPAPVREE
REETPVQPAPAPVAAPAPSTGGGVVGFLKRLFGAADPAPAPARPERTQAAPQGEGRGNRG
ERPRRERGEQGGNGQQGQGRGKQRGQQARGGNAQGGQQQPQGPKQERQEKQDKQGRNPQQ
QPAGNKQQSQKQDKAPRPPKQQPAEGSTEASARPAQQPQRQRSEEQPAQPVARPAAPADT
EATLTTAAAVAVPTAVAALDSPAMQPQAEAGDASEATAVADAAAGTEEAANAESGSRRRR
GRRGGRRRRRGASAEGSNAEGAQDPGEDAESDDDNEAGNEASAEATSPAPRADQPEFDFD
DLPAPVTPAPVAETPAAAEPATPVEANVVENSHADAKPVETAAPVEAATAAEAAVVEAAE
PAPAQAEPPAASVETAAVAATPGPTPAAAPVATVEAVVEEVASAPAAPAEAAAQAAAPEA
EAAPVETTPADAAAVASATAGEPVVETQAADVGAPAAAASEPAADAEAPSADEPAQTAAP
ANPGPFTTAGLFDQLPEAGAQPAAPEAAEAVEEPKAEPAEAADAGEASEPTPTGQPAEED
QADVPRRQD
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgccacgcaggcagaggaactgcgcgtggccatcgtcgac
ggccagaccctgtacgacatcgacatcgaacagccgtcgaaggaacagaagaagtccaac
atctacaagggccgcatcacccgcctcgagccctcgctcgaggccgccttcgtggagtac
ggtgccgagcgccacggcttcctgccgctgaaggaaatctcccgcgactacttccaggcc
ggcgtcgacccgaacaaggccggcatccgcgagctgctgcgcgagggccaggaggtcgtc
gtccaggtcgacaaggacgagcgtggcaacaagggcgccgccctgaccaccttcatctcc
ctggccggccgctacatggtgctgatgcccaactccccgacccccggcggcgtctcgcgc
cggatcgagggcgaggaccgggccgagctcaagcgcgccatggacgccctgaacatcccg
gacgacatgggcgtgatcatccgcaccgccggcgtgggccgcgacgcggaggagctgcag
tgggacctggactacctgctggccgcctggcgcgccgtcgccgaggccgcgctgagcaag
ccggccccgttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgtgactac
ctgcgcgccgacatcggcgagatcctggtcgacaccgaggagatgtacaacgacgcgcgg
cagttcatggaacaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgac
atcccgctgttcaaccgcttccagatcgagtcgcagatcgagaacgcctacgagcgcacc
gtgcgcctgccctcaggcggcgccctggtgatcgaccagaccgaggccctgaccgcgatc
gacgtcaactcggcgcgcgccaccaagggcggcgacatcgaggagaccgcgttccagacc
aacctggaggcggccgaggaagtggcccgccagctgcgcctgcgcgacctgggcggcctg
gtggtgatcgacttcatcgacatgtcctcgtccaagcaccagcgcgccgtcgaggaccgc
ctgcagaacgcgctcaagtacgaccgcgcgcgcgtccagatcggccgcatcagccgcttc
ggcctgctggagatgagccgccagcgcctgcgcgccagcctcggcgagtccagccagatc
gtgtgcccgcgctgcgaaggccacggccgcatgcgcagcatcgagtcgctgtcgctgtcc
atcatccgcgtcgccgaggagcacgcgatgaaggagaacaccgggcaggtgctggtccag
gccccggtggagatcgccaacttcctgctcaacgagaagcgcggtgcgctgcgcgagatc
gagcagcgccacgacgcgccgatcatcatcgtcgccgacgagcagctgcagaccccgcac
tacgaggtcacccgcctgcgcgagaacgagctgggcgaggagagcaacaggccgagctac
cagcgcggcaccccgcgcaagctgccggtgcacgccctgaccaaggcccagctcaacatc
ccgccgccgccggcggtcacccgcgtggccccgccgcgcccggccccggtccgcgaggag
cgcgaggagaccccggtgcagccggcgcccgcgccggtcgccgcccccgccccgtccacc
ggcggcggcgtggtcggcttcctcaagcgcctgttcggcgcagccgatccggccccggcg
cctgcgcgtccggaacgcacccaggccgccccgcagggcgaaggccgcggcaaccgcggc
gagcgtccgcgccgtgagcgtggcgagcagggcggcaacggccagcagggccagggccgt
ggcaagcagcgtggccagcaggcccggggcggcaacgcccagggtggccagcagcagccg
cagggcccgaagcaggagcgccaggaaaagcaggacaagcaggggcgcaatccgcagcag
cagcctgccggcaacaagcagcagtcgcagaagcaggacaaggctccgcgtccgccgaag
cagcagcccgccgagggcagcaccgaggcgagcgcccgtcccgcgcagcagccgcagcgc
cagcgcagcgaggagcagccggcccagccggtcgcacgtcccgccgccccggccgatacc
gaggccacgctgaccacggccgccgccgtggccgtgccgactgcggtcgccgcgctcgac
agcccggccatgcagccgcaggccgaggccggtgacgccagcgaggcgaccgccgtggcc
gatgccgccgcgggcaccgaggaagccgcgaacgcggagagcggcagccgccgtcgccgt
ggccgtcgtggcggccgtcgccgtcgtcgtggtgcttcggccgaaggcagcaacgccgag
ggcgcccaggacccgggcgaggacgccgagagcgatgacgacaacgaggccggcaacgaa
gccagcgccgaggcaaccagccccgcgccgcgcgccgaccagccggagttcgacttcgac
gacctgccggcgccggtgacgcctgccccggttgccgagacccctgccgccgccgagccg
gccaccccggtcgaggcgaatgtggtcgagaacagccacgcggacgccaaaccggtcgaa
accgccgccccggtcgaggccgccaccgcggccgaagccgctgtcgtggaagctgccgaa
ccggccccggcgcaggccgaacctccggctgccagcgtcgagaccgctgccgtcgccgcg
accccgggtccgaccccggccgccgcgccggtggccacggtcgaggcggtggtcgaggaa
gtcgcttccgctccggcagccccggccgaggctgcggcccaggccgctgctccggaagcc
gaagctgcaccggtcgaaaccactccggccgatgccgccgcggttgcctccgcgaccgcc
ggcgagccggtggtcgagacccaggctgccgacgtcggagccccggccgccgcggcgagc
gaaccggccgcggacgccgaagctccgtccgccgacgagccggcccagaccgcggccccg
gccaacccgggccccttcaccaccgccggcctgttcgaccagctgccggaggctggggcg
cagccggccgcgccggaagctgccgaagccgtggaagagcccaaggccgagccggctgaa
gccgccgacgccggagaagccagcgagccgaccccgaccgggcagccggccgaagaggac
caggcggacgtcccgcgtcgccaggactga
DBGET
integrated database retrieval system
