Paenalkalicoccus suaedae: FLK61_27325
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Entry
FLK61_27325 CDS
T08127
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
psua
Paenalkalicoccus suaedae
Brite
KEGG Orthology (KO) [BR:
psua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psua03009
]
FLK61_27325 (rlmD)
Enzymes [BR:
psua01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FLK61_27325 (rlmD)
Ribosome biogenesis [BR:
psua03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FLK61_27325 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
Methyltransf_15
MTS
Cons_hypoth95
PrmA
Methyltransf_11
RrnaAD
TPMT
N6_N4_Mtase
Methyltransf_23
TRM
Methyltransf_12
PCMT
UPF0020
Methyltransf_32
FtsJ
Motif
Other DBs
NCBI-ProteinID:
QKS70468
UniProt:
A0A859FCB1
LinkDB
All DBs
Position
989800..991167
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AA seq
455 aa
AA seq
DB search
MSKPPVTKNDTVSVTFNDVTHDGAGVAKINGYPLFVKNGLPGEEAEVKVVLTKKNYGFGR
IIKLTKESPSRVEPPCPIFSRCGGCQLQHISYTGQLELKQKQVRDVLERIGGISDVPVYE
TIGMDDPWRYRNKSQVPFGEQNRQIVAGFYAERSHEIVDMEECLIQHEDSDKAVRLVKEL
CETYGIRAYDDKSHKGTLRHVVIRHARETDELMIVLITKDKALPNKKNLVNALVEAFPNV
KSVVHNVNPKRTNVIFGDTFTTLWGENEITDYIGDVKFAISARSFYQVNPVQTKVLYDKA
LEYANLTGKETVIDAYCGIGTISLFLAQQAKQVYGVEIVPEAIEDAKRNAKLNHIENADF
FVGEAEKVMPWWQAQGIQPDVIVVDPPRKGCEESLLDTMVTMKPERIIYVSCNPATLARD
VKHLVANGYELKQVQPVDMFPHTGHVECVALVKLK
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaccaccagtaacaaaaaatgataccgtaagcgtcacatttaacgacgttacc
cacgatggcgcgggcgttgcaaagattaatggctacccgctatttgttaaaaacggcctg
ccaggtgaagaggcagaagtgaaagtagtccttacgaaaaaaaattacggcttcggtcgt
attataaagctaacgaaggaaagtccatccagagtggagccaccttgccctatattttct
cgctgtggaggctgtcaattacagcacattagctacacgggacagcttgagttaaagcaa
aagcaggtgagagacgtgcttgagcgcatcggtgggatctcggatgtgccggtgtatgag
acgatcggcatggacgatccttggcgctaccgcaataaatcacaggtaccattcggcgag
caaaaccgtcagattgttgcaggcttttatgctgaacgcagtcacgagatcgtggacatg
gaggagtgcctgattcagcacgaggatagtgataaagcggtgcggctcgtgaaggagctt
tgcgagacgtatggcatccgcgcctatgacgataaatctcacaaaggcacgctgcgccac
gtcgtgatccgtcacgcgcgcgagacggatgagctcatgattgtgctgatcacgaaggac
aaggcgctaccgaataaaaagaatctcgtgaacgcgcttgtagaagcattcccgaatgta
aaatctgttgtacacaacgttaatccaaaacgcacaaacgttatctttggcgatactttc
acgactctttggggcgaaaatgagataacggactatattggagacgtcaaatttgcgatt
tccgcacgttcgttttatcaggtcaacccagtgcagacgaaggtgttatatgataaagcg
ttagaatatgcaaatctgacagggaaagaaacggttattgacgcatactgtggcatcggt
acgatcagtcttttcctcgcacagcaagcaaagcaggtatatggcgtggagattgtgcca
gaggcgattgaggatgccaagcgcaacgcgaagctaaatcatatcgagaacgccgacttc
tttgtcggcgaagcggaaaaagtcatgccatggtggcaggcacagggcattcagccagac
gtcatcgtggtcgatccaccgcgtaaaggctgcgaagaaagcctcctcgacacgatggtg
acgatgaagccagaacgcatcatctacgtcagctgcaacccagctacgctcgcgcgtgat
gtgaagcatttagtggcaaacggctacgagctaaagcaagtgcagccagtcgacatgttc
ccgcataccgggcatgtggagtgtgtagcgttggtaaagttaaaatag
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