Paenalkalicoccus suaedae: FLK61_32280
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Entry
FLK61_32280 CDS
T08127
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
psua
Paenalkalicoccus suaedae
Pathway
psua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FLK61_32280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psua03019
]
FLK61_32280
Messenger RNA biogenesis [BR:
psua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FLK61_32280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Mur_ligase_C
Lactamase_B_6
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QKS71380
UniProt:
A0A859FET7
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Position
complement(1980923..1982593)
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AA seq
556 aa
AA seq
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MSNQQTEKIRIFGLGGLGETGKNLYVVELDDEIIILDAGCMHPEDDMLGVDIVIPDTTYL
TENKDKIKGIILSHGHEEHIAAVPYLLRDLQVPVYGSKFTLALVKDQCQEVKLKGQPKLV
EVHADSRIKVGRAPVSFFRTNHSIPDPLGVVIHTSQGPIIYTGDFKFDQNPVDGLVTELG
KLTEIGEKGVLALLSDSSNAEMPGHSPSESVISDGLKDAFHEAPGAIVVSVFATHIHRIE
QVLQAAKNTDRKVAVVGKLIERAVTIALELGYLTDEDDLFIPKKEVKKMPKDSVVVLTEG
SQGEPMSELVRMAKGSNPHFRIDGMDRVIISAMPTAGNEKLVSQMIDIISRTGARVVYGR
TKKIHVSGHAGQEELKLMLNVVKPQYFIPVSGEYRMQHAHRQLALSVGVEPQNIFLLEKG
DIVEFSKRKASQTNKIPSGHVLIDGLGVGDVGNIVLRDRRLLSKDGILVVVVTLNKKHDD
ILSGPDIISRGFVYVRESEALIKDAEELVRTSLTSAMSEKQTEWAQLKSQVRDQLSKFLY
EKTKRRPMIMPIIMEA
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgaatcaacaaacggaaaaaatccgcatatttggattgggcggattaggcgaaaca
ggaaagaatttgtacgtagtagagttagatgatgaaattattattttagatgcaggctgt
atgcacccagaggatgacatgctcggcgtggatatcgttatccctgatacaacctattta
acagagaataaagataaaattaagggaattattctctcgcacggacacgaagagcacatt
gcagcggtaccttatttactgcgcgatcttcaggtacctgtgtatggatcaaagtttaca
ctagcgctagtaaaggatcagtgccaagaagtgaagcttaaagggcagccgaagcttgtg
gaagtacatgcagattctcgtattaaagtaggacgagcacctgtaagcttcttccgaaca
aatcacagcattccagatccgctcggcgttgtgattcatacctcacagggaccgatcatt
tatacgggagatttcaagtttgatcaaaatcctgtagatggtttagtaacggagctaggt
aagcttactgaaattggcgaaaaaggtgtattagcacttctttcagatagttcaaatgca
gaaatgccagggcattcaccatcagaatccgtcatctctgatggtctaaaggatgcgttc
catgaggctccaggtgctattgtagtctccgtatttgcgactcatattcaccgcatcgaa
caagttcttcaagcggctaaaaatacagaccgtaaagtagcggttgtaggaaagctaatt
gaacgagcagttaccattgcgttagagttaggctacttaacagatgaagacgatcttttt
atcccaaaaaaggaagttaagaaaatgcctaaagatagcgtagtagttctaactgaaggc
agccaaggcgagccgatgagtgagcttgtgcgtatggcaaaaggttcaaaccctcacttc
cgtatcgacggaatggatcgtgtgattatctctgcgatgcctactgctgggaatgagaag
cttgtgtctcaaatgattgatatcatttcacgaacaggtgcgagagtcgtatacggtcgc
acgaaaaagattcatgtatcaggtcatgctggtcaagaagagttgaagctgatgttaaac
gttgtgaagcctcaatactttattccggttagcggagagtatcgtatgcagcatgctcac
agacagcttgcgctttcagtaggtgtcgagcctcaaaatatcttccttttagaaaaggga
gatatcgtagaattctcgaagcgtaaagcaagtcaaacgaataaaattccttctggtcat
gtcttaattgatggacttggagtaggagacgtcgggaacatcgtgttacgcgaccgcaga
ctcctttctaaagatggtattttagtcgttgttgtcacgctcaataaaaagcatgatgat
attttgtcaggtccagatattatttcgcgtggctttgtctatgtgcgagaatcagaagca
ttgatcaaagatgcggaagaactcgtacgtacatcgctgacaagcgcaatgagcgaaaaa
caaactgaatgggcacagcttaagagtcaggtgcgcgaccagcttagtaagtttctttat
gaaaaaacaaagcgtcgtccaatgatcatgcctattattatggaagcataa
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