KEGG   Pelolinea submarina: Pelsub_P0002
Entry
Pelsub_P0002      CDS       T05783                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
psub  Pelolinea submarina
Pathway
psub03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psub00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Pelsub_P0002
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psub03019]
    Pelsub_P0002
Messenger RNA biogenesis [BR:psub03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Pelsub_P0002
SSDB
Motif
Pfam: RNase_J_C Lactamase_B Lactamase_B_2 RMMBL
Other DBs
NCBI-ProteinID: BBB46775
LinkDB
Position
1988..3628
AA seq 546 aa
MKESNLKIIPLGGLGEVGRNMMLYEYEDTAIIVDCGSMFPENDMLGIDYIIPDFQYLRSR
KDKIRGIIFTHGHEDHIGAIHHFISEFNVPVYGTPLTLGLIKVKLTRRGMINNVSLNTIK
AGESIKIGPFKIDFFHVCHSIPDSVGLGIETPEGLIVQSGDYKFDHTPVDNWPTDYAKLV
EFSRRGVLALIADSTNATRPGWTPSERIIGEAFEQVFTQAKGRIIVASFASLISRVQQVV
NATVAHHRKIAIVGTSMVENVEMAQKLNYLNIPPGTMVSMNTALELPDSEVVIMCTGAQG
EPTSILGRLARGTQRQFDVRKGDTVVLSSKIIPGNEEAVYSTINDLFRRGANVIYEEIAP
VHVSGHGSQEDMKLLIHLTKPKYFIPGYGEMRMLKQASLLAQQTGIPEKHILIVENGAVI
NVRNGKIKLGGQVPTNTVFVDGSWVGDLGPDEMRDRAMLSQDGIVLVHINVNKRNGEMVG
HPEIISRGFAASQEAEEILNRLEKPIIQATNTSNGNLERNVIRTVKSIIYKETRRNPTVL
VTMSKI
NT seq 1641 nt   +upstreamnt  +downstreamnt
atgaaagaatcaaatctcaaaataatcccattgggcggcctgggagaagttggccgcaac
atgatgctgtatgaatacgaagatacagccatcatcgtagactgcggaagtatgttccct
gaaaacgacatgttggggatcgactatatcatcccggacttccaatatctgcgcagccgc
aaggacaaaatccgcggcatcatcttcacccacggtcatgaggaccacattggcgccatc
catcatttcatttctgaattcaacgtaccggtttatggcacgcctctgacattgggtttg
attaaagttaaattaacccggcgcggtatgatcaacaatgtctctttgaacaccatcaaa
gccggtgagagcatcaagattggaccttttaaaatcgatttcttccacgtctgccattcc
attcccgattcagtcgggttgggcattgagacgccggaagggttaatcgtccaatcgggt
gactataaattcgatcacactccggtagacaactggcctaccgattacgccaaactggtt
gaattctcccgcagaggcgttttagcgttgattgcagattcaaccaacgccacccggccg
gggtggacgccttccgagcgcatcatcggtgaggcttttgagcaagtattcacccaagcg
aaaggccgcatcatcgtggccagtttcgcctcgctcatctcgcgtgtccaacaagtggtg
aatgccacagtggcacaccaccgcaagattgccattgtaggcaccagcatggtagagaac
gtggaaatggcccaaaagctgaattacctgaatattcccccgggcaccatggtcagcatg
aatactgccctggaattacctgattcggaagttgtgatcatgtgcacaggcgcgcagggt
gagcccacttcaatcctgggccggttggcccgcggtacccagcgccaatttgacgttcgt
aaaggcgacacggttgtgttgtcatccaagatcatccccggcaacgaggaagcagtctat
tccaccatcaacgatttattccgccgcggcgcgaacgtaatttacgaagagatcgctccg
gtgcacgtctccggacacggcagccaggaagacatgaaactgttgatccacctgaccaag
ccgaagtacttcatccccggttacggtgaaatgcgtatgctcaaacaggcatccctgtta
gcgcagcagaccggcattccggaaaagcacattctgattgtggaaaacggcgcagtaatc
aatgtaagaaacggaaagatcaaattaggcgggcaggtacccaccaataccgtcttcgtt
gacggctcgtgggtcggcgacctgggcccggacgaaatgcgtgaccgcgctatgctatca
caggacggcattgtgctggtgcatatcaacgtgaacaaacgtaatggtgaaatggtaggc
catccggaaatcatcagccgtggttttgcagcctctcaggaagctgaggaaatcctcaac
cgcctggagaaacccatcattcaagccaccaatacttccaacgggaacctggaacgcaat
gttatccgcacggtgaaaagcattatttacaaagaaacccgccgcaaccccaccgtcctg
gtgacgatgagtaaaatctaa

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