Pelolinea submarina: Pelsub_P0002
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Entry
Pelsub_P0002 CDS
T05783
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
psub
Pelolinea submarina
Pathway
psub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pelsub_P0002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psub03019
]
Pelsub_P0002
Messenger RNA biogenesis [BR:
psub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pelsub_P0002
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Motif
Other DBs
NCBI-ProteinID:
BBB46775
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Position
1988..3628
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AA seq
546 aa
AA seq
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MKESNLKIIPLGGLGEVGRNMMLYEYEDTAIIVDCGSMFPENDMLGIDYIIPDFQYLRSR
KDKIRGIIFTHGHEDHIGAIHHFISEFNVPVYGTPLTLGLIKVKLTRRGMINNVSLNTIK
AGESIKIGPFKIDFFHVCHSIPDSVGLGIETPEGLIVQSGDYKFDHTPVDNWPTDYAKLV
EFSRRGVLALIADSTNATRPGWTPSERIIGEAFEQVFTQAKGRIIVASFASLISRVQQVV
NATVAHHRKIAIVGTSMVENVEMAQKLNYLNIPPGTMVSMNTALELPDSEVVIMCTGAQG
EPTSILGRLARGTQRQFDVRKGDTVVLSSKIIPGNEEAVYSTINDLFRRGANVIYEEIAP
VHVSGHGSQEDMKLLIHLTKPKYFIPGYGEMRMLKQASLLAQQTGIPEKHILIVENGAVI
NVRNGKIKLGGQVPTNTVFVDGSWVGDLGPDEMRDRAMLSQDGIVLVHINVNKRNGEMVG
HPEIISRGFAASQEAEEILNRLEKPIIQATNTSNGNLERNVIRTVKSIIYKETRRNPTVL
VTMSKI
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaatcaaatctcaaaataatcccattgggcggcctgggagaagttggccgcaac
atgatgctgtatgaatacgaagatacagccatcatcgtagactgcggaagtatgttccct
gaaaacgacatgttggggatcgactatatcatcccggacttccaatatctgcgcagccgc
aaggacaaaatccgcggcatcatcttcacccacggtcatgaggaccacattggcgccatc
catcatttcatttctgaattcaacgtaccggtttatggcacgcctctgacattgggtttg
attaaagttaaattaacccggcgcggtatgatcaacaatgtctctttgaacaccatcaaa
gccggtgagagcatcaagattggaccttttaaaatcgatttcttccacgtctgccattcc
attcccgattcagtcgggttgggcattgagacgccggaagggttaatcgtccaatcgggt
gactataaattcgatcacactccggtagacaactggcctaccgattacgccaaactggtt
gaattctcccgcagaggcgttttagcgttgattgcagattcaaccaacgccacccggccg
gggtggacgccttccgagcgcatcatcggtgaggcttttgagcaagtattcacccaagcg
aaaggccgcatcatcgtggccagtttcgcctcgctcatctcgcgtgtccaacaagtggtg
aatgccacagtggcacaccaccgcaagattgccattgtaggcaccagcatggtagagaac
gtggaaatggcccaaaagctgaattacctgaatattcccccgggcaccatggtcagcatg
aatactgccctggaattacctgattcggaagttgtgatcatgtgcacaggcgcgcagggt
gagcccacttcaatcctgggccggttggcccgcggtacccagcgccaatttgacgttcgt
aaaggcgacacggttgtgttgtcatccaagatcatccccggcaacgaggaagcagtctat
tccaccatcaacgatttattccgccgcggcgcgaacgtaatttacgaagagatcgctccg
gtgcacgtctccggacacggcagccaggaagacatgaaactgttgatccacctgaccaag
ccgaagtacttcatccccggttacggtgaaatgcgtatgctcaaacaggcatccctgtta
gcgcagcagaccggcattccggaaaagcacattctgattgtggaaaacggcgcagtaatc
aatgtaagaaacggaaagatcaaattaggcgggcaggtacccaccaataccgtcttcgtt
gacggctcgtgggtcggcgacctgggcccggacgaaatgcgtgaccgcgctatgctatca
caggacggcattgtgctggtgcatatcaacgtgaacaaacgtaatggtgaaatggtaggc
catccggaaatcatcagccgtggttttgcagcctctcaggaagctgaggaaatcctcaac
cgcctggagaaacccatcattcaagccaccaatacttccaacgggaacctggaacgcaat
gttatccgcacggtgaaaagcattatttacaaagaaacccgccgcaaccccaccgtcctg
gtgacgatgagtaaaatctaa
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