Pelolinea submarina: Pelsub_P1427
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Entry
Pelsub_P1427 CDS
T05783
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psub
Pelolinea submarina
Brite
KEGG Orthology (KO) [BR:
psub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psub03016
]
Pelsub_P1427
Enzymes [BR:
psub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Pelsub_P1427
Transfer RNA biogenesis [BR:
psub03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Pelsub_P1427
Prokaryotic type
tRNA splicing ligases
Pelsub_P1427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BBB48199
LinkDB
All DBs
Position
1682815..1684251
Genome browser
AA seq
478 aa
AA seq
DB search
MDLKQIEKINTYEWEISRSVQPWMRVPVRIFSDEIMLKAALQDRSLDQAVNAASLPGLVG
SVCVMPDVHQGYGFPIGGVAATDVQEGVISPGGIGYDINCGVRLMASDLPRQAAEHLLED
FTRLLYQACPSGVGEKGIVQVQAKELRRICEQGSGWALKNGFADREDIETSEDGGCIAGA
DWAAVSRRASERGAEQIGSLGSGNHFIEVDYVEQVFDEQAAAVMGLHKGSIAIQLHSGSR
GFGHQVCTDFVHQFQAVAAKYHIQLPDRELVCAPLNSTEGRAYLSAMRAAANYAFCNRQV
LAYAVRQTFEDCFPGYHLRNVYDLAHNIGKIETHRIGGQSVRVCVHRKGATRAFAPGHPD
LPQQYQKIGQPVLVPGSMGTSSWVLVGTESAMLKSFGSCSHGAGRVLSRTQAKKEVNGGQ
LREELAARGIFVQAGSLRGLAEEAPRAYKNIDRVIECIEGTGLGRSVARLVPLAVIKG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggatctcaagcagatagaaaagatcaatacctatgaatgggagatcagccgatctgtt
cagccctggatgcgcgtaccggtcaggatattttcggatgaaatcatgctgaaagctgcc
ttgcaggatcgttctttagaccaagctgtcaatgccgcttcattgcccggattggtgggc
agcgtttgcgtcatgccggatgtgcatcaggggtatggttttcccattggcggtgtggct
gctacggacgtgcaggagggcgtaatttcaccgggtgggattggatacgatatcaactgc
ggcgtgcgtttgatggccagcgatttgcccaggcaggcagccgagcatttattggaagat
tttacgcggctgctgtatcaggcttgccccagcggggtgggcgagaagggcatcgtacag
gtacaagccaaggaattgaggcgcatctgtgagcagggcagtggttgggctttgaaaaac
ggatttgccgaccgggaggatatcgagaccagcgaagatggcggctgtattgcgggcgcg
gattgggccgcagtcagtcggcgcgcttctgaacgcggcgcggaacagattggatcgttg
ggctccggcaaccattttatcgaagtggattatgttgaacaggtcttcgatgagcaggcg
gcggcggtcatgggtcttcataagggaagtatagctatccaactgcattccggttcgcgc
ggcttcggccaccaggtttgcacggattttgtccatcaatttcaggccgttgcagccaaa
taccacatccaactgccggatcgcgagctggtgtgcgcgcctttgaactccacggaaggg
cgcgcttatttgtcggccatgcgggcggctgcgaattacgccttctgcaaccggcaggtt
ttggcttacgcagtccggcagacttttgaagattgtttccccggatatcatttgcgcaat
gtttacgatttggcgcacaacattggcaaaattgaaacgcaccgaattggcggacaatcg
gttcgcgtctgtgtgcaccgcaaaggagccacgcgcgcttttgccccgggccatccggat
ctgccgcagcaatatcaaaaaatcggacaaccggtattggtgccgggcagcatgggaacc
agttcctgggtactggtgggaactgaaagcgctatgctcaaatccttcggatcgtgcagc
cacggcgccggacgtgtgctcagccgcacacaggccaagaaagaagtcaacggcggacag
ctgcgagaggaattggcagcgcgcggaattttcgtgcaagcgggttcactgcgtggatta
gctgaagaggcgccgcgggcgtataagaatattgaccgcgtgattgaatgcatcgagggc
accggcctgggccggagtgtggcgcggctggtgccgttggccgtcatcaagggttag
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