Pelolinea submarina: Pelsub_P1583
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Entry
Pelsub_P1583 CDS
T05783
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psub
Pelolinea submarina
Pathway
psub03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psub00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Pelsub_P1583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psub03021
]
Pelsub_P1583
03400 DNA repair and recombination proteins [BR:
psub03400
]
Pelsub_P1583
Enzymes [BR:
psub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Pelsub_P1583
Transcription machinery [BR:
psub03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Pelsub_P1583
DNA repair and recombination proteins [BR:
psub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Pelsub_P1583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF1707
Apocytochr_F_C
DUF1326
Motif
Other DBs
NCBI-ProteinID:
BBB48355
LinkDB
All DBs
Position
1858764..1862969
Genome browser
AA seq
1401 aa
AA seq
DB search
MTKPETINYRRLRPEKDGLFCEAIFGPTRDYQCYCGKYKNPRYKGIVCDKCGVEVTRSSV
RRERMGHIELASPVAHIWYTRRVPSYLGLLLNISRRNLDRVLYFAQYIVTFVDEDAKQKV
LNRLEDEVADADHDEMGNLEARIKEIQAARDVEIQELADQKKELEGKVDELIGQRMDPII
KEGQALEQKIQEKEGSAIRKDMVFESAEVTILKAGEVIDAKLLSVVQDAVKGKLEEVENE
VRSQIEDDMAKVDVGIEKVRAEADLNIANLSEQLGDIRLEVKSKIDQQRDELEDLAPFKF
LSENQYRDLKSRYGQVFRAEMGAEAFVDILSRLDLDQLAQDLWLEVKTTKSKQKRKKSTT
RLKVVEAFRRSKNRPEWMILSVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRL
KRLLELGAPDVIVRNEKRMLQEAVDSLIDNSQRGKALSRRGRRELKSLSDMLKGKKGRFR
RNLLGKRVDYSGRSVIVVGPKLKLYQCGLPKTMALELYRPFVIAGLVKKNYAANVKGARR
LMERNRPEVWEVLEEVIGDRPVLLNRAPTLHRLGIQAFEPVLIEGSAIQLHPLVTTAFNA
DFDGDQMAVHVPLSEKAVWEARNLMLASKNLLKPADGEPIISPSKDMVLGVYYLTREPRK
EYTGKEPAYSTFDEVDMAFRLNQVKVATQIRLQVKTWFDEAGKRMAEPETRVINTTVGRV
LFNYILPPEIQFYNDMLEKGRIKSLIAEIYDLCGEEVTTDVADKIKDIGFEYAMLSGTTL
SVADITVPEEKKGILADSNAAVEEVQKSFRRGRLTEQEMNERVIDIWQETTRVVGEAVRA
SMDPTGNLSTMANSGATKGGFGPISQLAGMRGLMADPSGRIIRLPIQSNFREGLTALEYF
ISTHGARKGLADTALRTADAGYLTRRLVDVAQDMIINEEDCETNDGIWIRKGDDIAGQSL
ESRLYGRIAGSNIVDPKTGEIIVERNQMLSNADLAKIVEAGVEEVFVRSPLTCELKHGLC
QKCYGMDLGRGKLVEKGTAVGTIAAQSIGEPGTQLTLRTFHTGGVAAGSDITTGLPRVEE
LFEARRMPKGEAVMCTITGTATVIPADSSNELNRVKVEHSELIQDEYAIPEGWEIKVTDE
QELKEAEVIAANEDATIIAQHGGRIEVKKDKVVVSYDQVETEEFDIPGMLRLIVKNGEKV
EAGQALTEGSLNPHTILRIKGREACQLYLLSEIQNVYRAQGQNINDKHFEVIIRKMMSKV
QVIRPGDSEFLPMDMVDRMEIRLLNETLRAEGRQPARFIEVLLGVTKASLTTDSWLSASS
FQHTIKVLAGAAIAADQDPLFGLKENVIIGKLIPSGTGFSDKRIDTINAMVEVNEHRFDE
PVAEEDLEAEAETETAPAPEE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaaacctgaaacaatcaattaccggcgcttgcgcccagagaaggatggtctgttt
tgtgaagcgatatttggacctactcgcgattaccaatgctattgtggtaagtacaagaac
ccccgttataaaggaattgtctgtgataaatgcggcgttgaagtaacccgttcttccgtc
cgccgtgagcgcatgggacacatcgaactggcatcccctgtagcgcatatctggtatacg
cgtcgtgtaccctcctatttaggcttactgctcaatatatcccgcagaaatcttgatcgc
gtactgtattttgcccaatatatcgtcactttcgttgacgaggacgcgaaacagaaggta
ttgaaccgcctggaagatgaggtggcggatgccgatcatgacgaaatgggcaaccttgaa
gcgcgcatcaaagaaattcaagctgctcgcgatgtagaaattcaggaactagccgaccag
aagaaagaattggaaggcaaagttgatgaattgattggtcagcggatggacccaatcatc
aaagaaggccaggctctggaacagaagatccaggaaaaagaaggatccgcgatccgcaag
gacatggtctttgaatcggcagaagttactatcttgaaagccggtgaggtgattgacgcg
aaattgctgtcagtcgttcaagatgccgttaaaggcaaattggaagaggttgagaacgaa
gtccgcagccaaatcgaggacgatatggctaaagtggacgttggcattgaaaaagtgcgt
gctgaagcggatttgaatatcgccaatttgagcgaacagttgggtgatatccgtttggaa
gtcaaatccaagattgaccagcagcgcgacgagttggaagaccttgctcccttcaaattc
ctcagcgagaaccaataccgtgacctgaaatcccgttatgggcaggttttccgtgccgaa
atgggcgcggaagcgtttgtggatatcctcagccgtttggatttggaccaattggcccag
gacttgtggctggaagtaaagacgaccaagagtaaacaaaaacgcaagaagagcaccact
cgtttgaaggtagtggaagctttccgacgttccaaaaaccgtccggagtggatgattctc
tcggtgctgccggtgattcctcccgacctgcgcccgatggtgcaattggatggcggccgc
tttgcgacctccgacctgaacgatctgtaccggcgtgtgatcaaccgcaacaatcgtttg
aagcggttgctggaattaggcgctccggatgtaatcgtacgcaatgaaaagcgtatgttg
caggaagctgtcgattccctgattgataactcacagcgcggcaaagccttatcacgccgc
ggtcggcgcgaactgaaatccctcagcgatatgctgaagggtaagaagggccgtttccgc
cgcaacctgttgggtaagcgtgtggattactccggccgttccgttattgtggttggcccg
aaactcaaactgtaccagtgcggtctgcccaagaccatggcgttggaactctaccgtccg
tttgttatcgccgggctggtcaagaagaattacgccgccaacgtgaaaggcgcgcgccgt
ttgatggaacgcaaccgccccgaagtttgggaggttttggaagaagtcattggcgatcgc
ccggttctgctgaaccgcgcgcctacgttgcaccgcctgggtattcaagcctttgaaccc
gtgctgattgaaggcagcgcaatccagcttcacccgctggtgaccacggctttcaacgcc
gactttgacggtgaccaaatggccgtgcatgtgccgctttccgaaaaagcagtttgggaa
gcccgcaatttaatgctggcatccaagaacttgctcaagcctgccgacggtgaaccgatc
atttcgccttccaaagacatggtgttaggtgtttattacctgacccgtgaaccacgcaag
gaatataccggtaaagaaccggcttattcaacttttgatgaagtcgatatggcgttccgc
ctgaatcaggtgaaagtcgcaactcaaattcgtttacaagtaaaaacctggtttgatgaa
gctggaaaacgcatggccgaaccggaaacccgtgtaatcaacaccacggttggccgtgta
ttgttcaactacattctgccgcctgaaatccagttctacaatgacatgctggaaaagggc
cgcatcaagagtttgattgcagaaatttacgacttatgtggtgaagaagtcaccacggat
gtggccgataagatcaaggacattggctttgaatacgccatgctttccggcacaacctta
tccgtggcagatatcactgttcctgaagaaaagaaaggtattctggcagattccaatgcg
gcagtagaagaagtacagaaatcgttccgccgcggcagattaaccgaacaggaaatgaac
gagcgcgtgattgatatttggcaagaaaccactcgtgtagtgggtgaagccgtacgcgcg
agcatggatcccaccggcaacctgtccaccatggcgaattccggagctaccaaaggcggt
ttcggcccaatttcacaattagccggtatgcgtggtttgatggctgacccatcaggacgt
attatccgcctgccgattcaatccaacttccgcgaaggtctgactgccctggaatacttc
atctccacccatggcgcccgtaaaggtctggcagataccgctttgcgtacagcagatgcc
ggttacctgacccgccgtttggtggatgtcgcccaggacatgattattaatgaagaagac
tgcgaaaccaatgatggcatttggatccgcaaaggcgatgatatcgccggccaatccctg
gaatcccggttgtacggtcgtatcgcgggcagtaatattgttgacccaaagacaggcgag
atcatcgttgaacgcaatcaaatgctgagcaacgcggatctggcgaagattgtcgaagct
ggagtggaagaagtatttgtacgttctcccctgacttgtgaattgaaacatggtctgtgc
caaaagtgttacggcatggatttgggacgcggtaaattagtggaaaagggcacagcggtg
ggaaccatcgcagcgcaatccattggtgagcctggcacgcagctgactctgcgtacattc
cacaccggtggtgtggcggccggttccgacatcacgactggtttgccccgtgtggaagag
ctgtttgaagcacgccgtatgccgaaaggcgaagccgttatgtgcaccatcaccggtacg
gccacggttatcccagcagattcttccaatgagttgaaccgcgtgaaagtcgaacacagt
gaactcattcaggatgaatatgcgattcccgagggttgggaaatcaaagtgaccgatgaa
caggagctgaaagaagccgaagtcatcgccgctaacgaagacgctaccattattgcccaa
cacggcggacgtatcgaagtcaagaaagataaagtagtggtttcttacgatcaggttgaa
actgaggaatttgacattcccggtatgctgcgcctgattgttaaaaatggtgaaaaagtc
gaagccggtcaggccttgaccgaaggttcattgaacccgcacaccatcctgcgtatcaaa
ggccgtgaggcttgccagctatacctgctgagcgaaattcagaacgtttaccgtgcgcag
ggccagaacattaacgataaacactttgaagtaatcatccgcaagatgatgagcaaagtc
caagttatccgcccgggcgattcggaattcctgccgatggatatggtcgaccgcatggaa
atccggctgctgaacgagactttgcgcgccgaaggaagacaacccgcgagattcattgag
gttctgttgggtgttacaaaggcctcattgaccaccgattcatggttgtctgcttcttcc
ttccagcacaccattaaagtgctggcaggcgcagccatcgcagcagatcaggatccgctg
tttggcttgaaggagaacgtgatcatcggaaagttgatcccatccggcacaggcttctcg
gataagcgtattgataccatcaacgcaatggtcgaagtaaacgaacatcgttttgatgaa
ccagtagctgaagaagatctggaagcggaagctgaaacagaaactgctccggcaccggaa
gaataa
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