Candidatus Planktophila sulfonica: A1sIA56_00680
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Entry
A1sIA56_00680 CDS
T05158
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psuf
Candidatus Planktophila sulfonica
Pathway
psuf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psuf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A1sIA56_00680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psuf03400
]
A1sIA56_00680
Enzymes [BR:
psuf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A1sIA56_00680
DNA repair and recombination proteins [BR:
psuf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A1sIA56_00680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASY15456
UniProt:
A0A249KFE1
LinkDB
All DBs
Position
146172..149657
Genome browser
AA seq
1161 aa
AA seq
DB search
MRGILSVLHSDTEVSSALNDSTKIIAPASSYPFLIALAAQEKPLLIVTSSSRGSEDLSEY
LKSLHPTVFEFPAWETLPHERLSPRSDTVARRLSTLYSLTENPNNPIVVAPVRAVIHRFI
ATLAKSPLWTLEIGQEIGLTELITHLTELAFSRTDLVEKRGEFAVRGGIVDVFLPLAMHP
VRIDFFGDEIEEMRYFEVADQRTSEAVVGKLAILPCREFLLTDSIRERAEKIKSQYPSAL
EILDKLAQGTIVDGMESLIPLLTDDFETILDRMPKGTQVVFIDDERIRSRTADLIETNQE
FLEASWSNAAIGGSAPLPVKNITYFDWKELQEEIARLALPVRALNAFGSDLDDDARFLDI
SAIDPMRGNVEALCELLRTGLEAHQSVIFSTTGHGMAERYAGIFRDADLPVQMVQNLSAQ
PTKGSIHVTQSSLGYGFKSDHAEILFVTERDLSGSKTSSKDGARMPSKRKQAIDPLELRA
GDFVVHEQHGIGRYVELIQRTVGGVTREYLVIEYAPAKRGQPSDRIFVPTDTLEQVSKYV
GGETPTVHRIGSGEWQKAKGRARKAVRQIAGELIRLYAARTSAPGFAFSPDTPWQRELED
AFSYIETPDQLSTIEDVKRDMERPYPMDRIICGDVGYGKTEIAIRAAFKAVQDGKQVAVL
VPTTLLVQQHSKTFAERYAGFPIKVAGLSRFNTAKESKEILAELTSGAVDVVVGTHRILS
QDVQFKDLGLVIVDEEQRFGVEQKESLKKMRTTVDVLAMSATPIPRTLEMAVTGIREMST
ITTPPEERHPILTYVGPAEDAQIKAAIHRELLRDGQIFYIHNRVESIDRAASKIQELVPE
ARIRIAHGQMSEGQLEDVILAFWNRDFDVLVCTTIVESGLDIANANTLIVERADNFGLSQ
LHQLRGRVGRGRERAYAYFLYPQDQPLTEIALDRLKTIATNTDLGSGMRVALKDLEIRGA
GNLLGGEQSGHIADVGFDLYMRMVGEAVNDYKTGIIETEEKNHECKVELPVNAHLSEIYV
PGERLRLDLYRRLADVRNNEDVESIREELVDRFGELPEEAQSLLQVAQLRAFAKSLGITE
VVAAGKFLRISPLVLPESKQLRLNRLFPGSLYKTATNTVMITIPRAAAWTPTAQGSALIG
DTSLLEWASKSLDELTKASTK
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgagaggaattctctcggtattacatagtgatactgaagtctcttctgcgctcaatgat
tcaaccaagatcattgcacctgcatctagctatccattcttaatcgctctggctgcacaa
gagaagccacttctgattgtcactagttccagccgcggcagtgaagatctctctgaatac
ctcaagagccttcatcccactgtctttgaatttcctgcctgggagacccttccgcacgag
cgcttgagtccacgcagtgacaccgtagctcgcagactttcgactctatattcactgacc
gaaaatccaaataatccaatcgttgttgcacctgtgcgcgcagttattcatcgcttcatt
gcaactcttgcaaagagtccgctgtggacactcgaaattggtcaagagattggccttact
gaactcattacacatttaacagagttagctttttctcgtactgaccttgtagaaaagcgt
ggagagtttgccgttcgcggcggcatcgtcgatgtcttcttgccacttgcgatgcatcca
gtgcgcattgatttctttggtgatgaaattgaagagatgcgctactttgaagttgcagat
cagcgcaccagtgaagctgttgttggaaagttagcaatcttgccttgccgtgaattctta
ctcaccgacagcatccgcgagcgagcagagaagattaagagccagtatccaagcgctctg
gaaatcctcgacaagttagcgcaaggaacaatcgttgatggcatggaatctctcattcca
ttactcacagatgactttgaaacaattctggatcgcatgcctaagggcacccaagttgta
tttattgacgatgaacgcattcgttctcgaaccgctgatctcattgaaactaaccaagag
tttctagaagcctcttggtccaatgccgcgatcgggggatcagcgccgctaccggtaaag
aacatcacttactttgattggaaagagctacaagaagagattgctcgccttgctctaccc
gtgcgcgcactcaatgcatttggaagcgacctcgatgacgatgcacgcttccttgatatc
tcagcaatcgatccgatgcgcggaaatgtggaagcactctgcgaacttctgcgcactggt
ttagaggcccaccaatcagtcatcttctcaaccaccggccacggaatggctgagcgttat
gcaggaatcttccgtgatgcagatctgcccgtgcagatggtgcagaacttaagcgcccaa
ccaacaaaaggctcaattcacgttactcaatcctctttaggttatgggtttaagagtgat
cacgccgaaattctctttgttactgaacgcgatttatcgggcagtaagaccagcagtaaa
gatggtgcccgcatgccctcaaagcgcaagcaagctattgatccactcgaacttcgtgca
ggtgactttgttgttcacgaacagcatggaatcggtcggtacgtcgaacttattcaacga
actgtcgggggagttacccgcgaatatttagtcatcgaatatgcaccagctaagcgcggc
caacctagcgatcgcatctttgttcccacagatactttggagcaggtaagtaaatatgtt
ggtggtgaaacacctacggtgcaccgcatcggcagcggtgaatggcagaaagcaaagggc
cgtgcgcgtaaagcggttcgacagattgctggcgagctcattcgactctatgcagcgcgc
acaagtgctccaggctttgctttttcacctgatacgccgtggcagcgtgaactcgaagat
gcattttcttacatcgagacccccgatcagttatcaaccattgaagatgtaaagcgcgat
atggaacgtccatatcccatggatcgcatcatttgtggcgatgtgggttatggaaagact
gagattgcaatccgtgccgcatttaaagcggtgcaagatggcaagcaagtagccgttctt
gttcctacaactcttcttgttcagcaacactcaaagacatttgcagaacgttatgcaggt
tttcccatcaaggttgcaggtctctcacgatttaacactgcgaaagagagtaaagaaatt
cttgctgaactgacatcgggggctgtcgatgttgtagtaggtacccaccgaatcctttcg
caagatgtgcaatttaaggatctcgggcttgttatcgtcgatgaggaacagcgctttggc
gttgagcagaaggaatcgctgaagaagatgcgcacgacggtcgatgtcttagcgatgtcg
gcaacgcctattccacgcacacttgaaatggctgttaccggtattcgcgagatgtccacg
attacaacgccaccagaagagcgccatcccatccttacctatgtaggacctgctgaagat
gctcagattaaagctgctatccaccgtgaactgctgcgcgatggtcagatcttctatatc
cataaccgcgtggaatccattgatcgtgcagcttcaaagattcaagaactcgttccagaa
gcgcgcattcgaattgctcatgggcagatgtctgaaggccaattagaagatgtcatcttg
gcattctggaatcgcgacttcgacgttcttgtctgcaccacgattgtggaaagcggcctt
gatattgcaaatgccaacactttgattgtggaacgcgcagataacttcggcctttcgcag
cttcaccaattacgaggtcgagtcggtcgcggccgcgaacgtgcgtatgcatacttcctg
tatccgcaggatcaaccgctgactgaaattgcgctcgatcgtttaaagacaattgccacc
aacacggatttaggttctggaatgcgcgttgcactcaaagaccttgagattcgcggcgct
ggaaacttgctgggtggcgaacagtcaggtcatatcgctgacgttggctttgacctttat
atgcgcatggtcggtgaagcggtaaatgattacaagactggcatcatcgaaactgaagag
aagaaccacgaatgcaaagtcgaacttccggttaacgcacacctctctgaaatctatgtt
ccaggtgagcgacttcgcctcgatctctatcgtcgcttagctgatgtccgcaataacgaa
gatgtggaatcgattcgcgaagagttagttgatcgcttcggcgaacttcctgaagaggcg
caatcacttctgcaggtcgcgcagcttcgtgcatttgcgaaatcactagggattacagaa
gttgtagcggctggaaagttcctccgaatctcgcccctagttctgccggaatcgaaacag
ctgcgcctgaaccgactatttcctggttcgctctataaaactgcgacaaatacagtgatg
atcacaattcctcgcgcagcagcctggaccccaactgcacaaggttcggccttgataggg
gatacttctcttctggagtgggcgtcaaagtccctcgatgaattaacgaaagcgagcact
aagtga
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integrated database retrieval system
