Candidatus Planktophila sulfonica: A1sIA56_01215
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Entry
A1sIA56_01215 CDS
T05158
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psuf
Candidatus Planktophila sulfonica
Pathway
psuf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psuf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A1sIA56_01215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psuf03021
]
A1sIA56_01215
03019 Messenger RNA biogenesis [BR:
psuf03019
]
A1sIA56_01215
Transcription machinery [BR:
psuf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
A1sIA56_01215
Messenger RNA biogenesis [BR:
psuf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A1sIA56_01215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
NACHT
Spore_III_AA
HeH
AAA_22
PIP5K
CDC45
Motif
Other DBs
NCBI-ProteinID:
ASY15554
UniProt:
A0A249KFI7
LinkDB
All DBs
Position
248936..250504
Genome browser
AA seq
522 aa
AA seq
DB search
MTTTEPVRSSSPELSSMTLPKLKEVASQLGIEGAAKLKKDDLVTAIADLQAANREAAKAE
REARREARNAKKNNRDNNAKNSDDSSDEGDDEDDSSDNAPSSNDRGNDREDRGSRNRRDR
NRGRDRNRDRGNREEREPVIGEDDVLVPVGGLVDIMDNYSFIRTGGYLPGPNDVYVSQGQ
VRKYGLRKGDVVTGQVRQLREGETRQKYNPLISLETINGLPYEEARGRVEFGKLVPLYPQ
ERLRLETEPNILTTRVIDLIAPIGKGQRGLIVSPPKAGKTMVLQSIANAITTNNPECHLM
VVLVDERPEEVTDMQRSVKGEVIASTFDRPADDHTTIAELAIERAKRLVEMGHDVVVLLD
SITRLGRAYNIAAPASGRILSGGVDSAALYPPKKFFGAARNIEDGGSLTILATALVDTGS
RMDEVIFEEFKGTGNMELILDRKMADKRIFPAVNVVASGTRKEEILMGTEELNIVWKLRR
VLHALEPQAALELLLEKMKGTKSNVEFLMQIQKTTAGPDDSK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaacagaaccagttcgttctagcagcccagaactttcaagcatgacccttcct
aagttaaaggaagttgcgtcacagctcggtatcgagggtgcagcgaagctcaagaaggat
gatctcgttacagcaattgcagatctccaggcagccaaccgcgaagcagcgaaggcagag
cgtgaagctcgccgtgaagctcgcaatgctaagaagaacaaccgcgataacaacgcaaag
aattcagatgactcttcagatgaaggcgacgatgaagatgattcatcagataatgcacct
tctagtaacgaccgtggaaacgatcgtgaagaccgtggcagccgtaaccgccgcgatcgc
aaccgtggacgcgatcgcaaccgcgaccgtggaaaccgcgaagagcgcgagccagtaatc
ggcgaagatgatgtcttggtaccagttggtggcctcgtagacatcatggataactattca
tttattcgtacaggtggataccttccaggtcctaacgacgtctacgtttcacaaggccag
gtacgtaagtacggtcttcgtaagggagatgttgtaacaggtcaggttcgccagctacgc
gaaggcgaaactcgtcagaaatacaacccacttatctctctcgagacaatcaacggattg
ccatatgaagaagcacgtggccgcgttgaatttggaaagcttgttcctctctacccacaa
gagcgtcttcgccttgagacagagccaaacattcttacaactcgcgtcatcgacttgatc
gcaccaatcggtaagggccagcgcggacttatcgtttcgcctccaaaggccggtaagacc
atggtcttgcaatcaattgcaaacgcaatcacaacaaacaatcctgaatgtcacttgatg
gttgttctcgttgatgagcgccctgaagaagttacggatatgcagcgcagcgttaagggt
gaagttattgcttctaccttcgaccgccctgcagatgaccacacaacaatcgcagagctc
gctatcgagcgcgcaaagcgcctcgttgaaatgggccacgatgtagttgttcttctcgac
tcaatcacacgtttaggtcgcgcatacaacatcgcagcacctgcatcaggccgcatcctt
tctggtggtgttgattcagctgctttgtatccaccaaagaagttcttcggtgctgctcgt
aatattgaagatggtggatcactcaccattcttgcaacagctctagttgataccggatcc
cgtatggatgaagttatcttcgaagagttcaagggcacaggaaatatggagctcatcctc
gatcgcaagatggctgataagcgcatcttccctgcggttaacgttgttgcatcaggaact
cgtaaggaagaaatccttatgggaactgaagaactcaacattgtctggaagcttcgtcgc
gttcttcacgcactcgaaccacaggctgcactcgaactcttgctcgagaagatgaagggc
actaagtccaacgtcgaattcttgatgcagattcagaagacaacagctgggccagacgac
agcaagtaa
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